NC_036978.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036978.1 Commiphora wightii voucher SUPG003 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156064
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4225--4249 11 2.3 11 100 0 50 68 16 0 16 1.22
4331--4364 14 2.5 14 90 4 52 91 5 0 2 0.51
4668--4705 13 2.9 13 100 0 76 47 15 0 36 1.46
7285--7314 15 2.0 15 100 0 60 40 13 26 20 1.89
8185--8220 17 2.1 18 89 5 56 13 22 0 63 1.29
14692--15131 219 2.0 219 100 0 880 36 19 9 35 1.84
15006--15516 257 2.0 252 97 2 961 39 15 12 32 1.84
15598--15628 14 2.2 14 94 0 53 16 3 12 67 1.35
28816--28840 12 2.1 12 100 0 50 52 16 8 24 1.70
30426--30451 13 2.0 13 100 0 52 23 7 23 46 1.78
37000--37026 12 2.2 12 100 0 54 33 7 7 51 1.58
37591--37702 34 3.2 34 66 20 95 52 4 7 35 1.49
37631--37736 24 4.4 24 66 21 62 52 6 8 32 1.57
37590--37747 71 2.3 71 95 2 284 54 5 7 32 1.51
37631--37741 23 4.7 22 69 19 64 53 6 9 31 1.57
37732--37770 20 2.0 20 85 10 53 74 0 10 15 1.07
38415--38443 15 1.9 15 100 0 58 68 0 13 17 1.20
48566--48774 111 1.9 113 97 2 404 34 10 4 50 1.58
58733--58757 12 2.1 12 100 0 50 52 16 0 32 1.44
60755--60903 74 2.0 74 98 0 289 35 15 13 35 1.87
61090--61115 13 2.0 13 100 0 52 53 7 0 38 1.30
61379--61404 13 2.0 13 100 0 52 53 7 0 38 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60893--61470 289 2.0 289 99 0 1147 37 18 10 33 1.85
66179--66206 14 2.0 14 100 0 56 35 14 14 35 1.86
68295--68338 21 2.1 21 84 16 56 72 0 9 18 1.10
68405--68431 10 2.7 10 100 0 54 40 0 22 37 1.54
71113--71151 21 1.9 21 94 5 71 30 25 10 33 1.89
75397--75447 23 2.2 23 100 0 102 54 11 3 29 1.54
83869--83897 13 2.1 14 93 6 51 20 6 0 72 1.07
93158--93214 18 3.2 18 97 0 105 26 10 28 35 1.89
101483--101520 18 2.1 18 95 0 67 23 10 5 60 1.50
109610--109675 32 2.1 32 97 0 123 40 24 9 25 1.84
111177--111219 20 2.2 20 100 0 86 20 13 4 60 1.51
115774--115813 19 2.0 20 95 4 73 27 0 10 62 1.27
116215--116250 16 2.2 16 100 0 72 38 5 5 50 1.49
125688--125714 13 2.1 13 100 0 54 29 7 25 37 1.83
126120--126152 17 2.0 16 94 5 57 27 24 12 36 1.91
131034--131076 20 2.2 20 100 0 86 60 4 13 20 1.51
132575--132640 32 2.1 32 97 0 123 25 9 24 40 1.84
140730--140767 18 2.1 18 100 0 76 63 5 10 21 1.46
148317--148373 18 3.2 18 97 0 105 35 28 10 26 1.89
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Tables: 1
The End!