NC_037151.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037151.1 Ziziphus mauritiana voucher ZMAU20161128 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161543
Tables: 1
This is table 1 of 1 ( 105 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4496--4521 12 2.2 12 100 0 52 76 0 0 23 0.78
5122--5174 12 4.2 12 82 15 63 30 7 1 60 1.35
5114--5162 12 3.6 15 84 15 63 28 6 2 63 1.30
5114--5173 26 2.3 26 88 8 88 28 6 1 63 1.29
6548--6578 11 2.9 11 95 4 55 70 0 0 29 0.87
7148--7174 14 1.9 14 100 0 54 29 14 0 55 1.40
8054--8081 14 2.0 14 100 0 56 0 35 7 57 1.26
8734--8773 19 2.1 19 85 4 53 20 0 5 75 0.99
8870--8895 13 2.0 13 100 0 52 46 0 0 53 1.00
9161--9196 16 2.2 17 90 5 56 77 0 11 11 0.99
9162--9233 27 2.6 27 78 8 65 76 1 5 16 1.05
9443--9467 13 1.9 13 100 0 50 20 16 0 64 1.30
10523--10563 20 2.0 20 100 0 82 56 4 4 34 1.42
10596--10632 15 2.5 15 90 0 56 64 2 5 27 1.28
10605--10636 15 2.1 15 100 0 64 62 0 6 31 1.20
10958--11006 9 5.2 9 79 16 55 40 0 6 53 1.26
10958--11006 18 2.6 19 87 6 64 40 0 6 53 1.26
10958--11018 20 3.2 19 86 4 70 37 1 9 50 1.45
11030--11083 15 3.8 14 79 18 58 42 0 1 55 1.10
11037--11083 15 3.2 15 87 3 69 44 0 0 55 0.99
11205--11261 12 5.0 12 81 12 75 52 0 5 42 1.24
11205--11287 11 7.5 11 75 11 62 49 0 6 44 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13787--13816 15 2.0 15 93 0 51 33 13 10 43 1.77
14281--14313 15 2.2 15 100 0 66 57 0 18 24 1.40
14369--14402 17 2.0 17 100 0 68 41 11 17 29 1.85
15255--15296 20 2.1 20 95 0 75 38 16 9 35 1.81
28547--28587 22 1.9 22 90 5 66 41 17 9 31 1.82
29838--29924 33 2.7 33 87 3 115 28 0 10 60 1.29
29979--30053 13 6.0 12 69 18 55 56 0 2 41 1.13
29999--30067 16 4.0 16 77 17 75 56 0 4 39 1.19
29987--30068 37 2.2 37 89 4 121 54 0 3 41 1.18
30514--30557 21 2.1 21 100 0 88 40 4 9 45 1.56
32367--32405 19 2.1 19 100 0 78 25 25 10 38 1.87
34942--34971 12 2.5 12 100 0 60 40 0 0 60 0.97
34972--35014 21 2.0 21 82 8 52 69 0 6 23 1.12
39009--39044 15 2.4 15 100 0 72 58 5 0 36 1.22
39009--39060 17 3.2 17 86 10 56 59 3 0 36 1.16
39174--39212 15 2.4 16 83 8 53 53 2 0 43 1.14
45325--45374 13 3.7 13 81 5 55 60 14 0 26 1.34
47292--47363 15 5.1 15 78 21 93 40 0 11 48 1.39
47294--47353 20 3.0 20 100 0 120 40 0 10 50 1.36
47355--47429 10 7.5 10 73 20 59 42 1 1 54 1.17
47370--47432 20 3.1 20 90 4 99 41 1 0 57 1.08
47366--47443 10 7.2 12 73 22 59 43 1 0 55 1.08
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47366--47443 31 2.5 33 81 12 92 43 1 0 55 1.08
47438--47483 12 4.0 12 80 8 60 67 6 4 21 1.32
47438--47486 23 2.2 22 88 3 71 67 6 4 22 1.30
49931--49963 17 1.9 17 100 0 66 30 21 0 48 1.50
50382--50413 9 3.6 9 95 0 55 71 0 0 28 0.86
50796--50829 17 2.0 17 100 0 68 29 5 11 52 1.61
52644--52679 18 2.0 18 94 0 63 33 11 2 52 1.51
53288--53320 16 2.1 16 100 0 66 18 0 12 69 1.18
53286--53337 22 2.3 23 80 9 63 23 0 13 63 1.29
54982--55055 26 2.8 26 75 15 73 47 1 6 44 1.38
55013--55051 19 2.1 19 100 0 78 48 0 10 41 1.37
58618--58670 12 4.7 11 82 17 65 33 0 0 66 0.92
58618--58671 22 2.4 24 87 9 78 33 0 0 66 0.92
60700--60756 15 4.1 13 77 22 62 33 1 0 64 1.04
60700--60756 14 4.1 14 76 19 57 33 1 0 64 1.04
61961--62008 14 3.5 14 72 16 55 70 4 8 16 1.27
61958--62014 27 2.1 27 86 0 87 63 8 8 19 1.49
62950--62974 12 2.1 12 100 0 50 24 16 0 60 1.36
62986--63021 18 2.0 18 100 0 72 27 5 5 61 1.41
63334--63381 23 2.1 23 88 3 71 68 6 6 18 1.32
63334--63392 22 2.6 22 81 7 57 69 5 8 16 1.32
63587--63620 17 2.0 17 100 0 68 47 0 11 41 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63615--63647 15 2.3 15 89 5 50 33 15 6 45 1.70
63696--63739 14 3.1 14 90 0 70 45 0 0 54 0.99
67436--67468 15 2.2 15 100 0 66 6 6 6 81 0.97
69789--69815 13 2.1 13 100 0 54 29 7 0 62 1.22
69812--69868 17 3.1 18 87 10 80 52 1 0 45 1.11
71294--71329 12 3.0 12 100 0 72 25 25 16 33 1.96
72314--72342 15 1.9 15 100 0 58 48 20 3 27 1.66
72444--72482 21 1.9 21 94 5 71 30 23 10 35 1.88
74356--74410 22 2.7 21 91 8 87 47 0 5 47 1.25
76258--76309 13 4.2 13 92 7 90 40 5 0 53 1.25
81798--81857 29 2.1 29 100 0 120 38 16 6 38 1.75
85532--85576 9 5.3 9 74 15 51 40 2 2 55 1.24
85535--85581 24 2.0 24 95 0 85 38 2 4 55 1.31
86598--86626 14 2.1 14 100 0 58 31 6 6 55 1.53
89892--89931 20 2.0 20 95 0 71 37 10 2 50 1.50
93692--93716 12 2.1 12 100 0 50 44 0 24 32 1.54
94109--94176 21 3.2 21 82 0 82 11 22 7 58 1.57
96529--96600 18 4.0 18 100 0 144 33 5 27 33 1.80
96529--96593 9 7.2 9 78 0 76 33 4 26 35 1.77
98821--98860 20 2.0 20 100 0 80 40 20 15 25 1.90
104640--104672 11 3.1 11 91 4 50 33 0 15 51 1.43
105501--105553 25 2.1 25 100 0 106 18 15 18 47 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
105636--105667 16 2.0 16 100 0 64 31 37 6 25 1.81
112855--112920 32 2.1 32 97 0 123 40 24 9 25 1.84
115648--115697 24 2.1 24 100 0 100 48 4 4 44 1.40
118364--118394 15 2.1 15 100 0 62 54 6 12 25 1.62
126867--126930 13 4.9 13 72 16 53 53 1 1 43 1.19
126867--126931 7 8.9 7 71 15 51 53 1 1 43 1.19
132422--132457 18 2.0 18 100 0 72 50 5 11 33 1.61
137705--137770 32 2.1 32 97 0 123 25 9 24 40 1.84
144958--144989 16 2.0 16 100 0 64 25 6 37 31 1.81
145072--145124 25 2.1 25 100 0 106 47 18 15 18 1.83
145953--145985 11 3.1 11 91 4 50 51 15 0 33 1.43
151765--151804 20 2.0 20 100 0 80 25 15 20 40 1.90
154025--154096 18 4.0 18 100 0 144 33 27 5 33 1.80
154025--154089 9 7.2 9 78 0 76 30 29 6 33 1.82
156450--156538 21 4.1 21 81 5 81 56 7 23 12 1.62
156909--156933 12 2.1 12 100 0 50 32 24 0 44 1.54
160694--160733 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!