NC_037190.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_037190.1 Asarum sieboldii voucher NIBR-VP0000640510 chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 193356 Tables: 1 2 This is table 1 of 2 ( 237 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5--142 6 25.2 6 71 18 52 58 0 0 40 1.03 5--137 16 8.2 16 73 21 84 58 0 0 40 1.03 5--138 22 6.3 22 78 12 113 58 0 0 40 1.03 47--142 9 11.6 9 73 24 63 61 0 0 38 0.96 137--172 8 4.4 8 93 6 63 52 11 11 25 1.69 137--171 17 2.1 17 100 0 70 54 11 11 22 1.68 1929--1989 11 5.5 11 79 14 72 29 6 1 62 1.30 1955--1994 20 2.0 20 100 0 80 35 10 0 55 1.34 2657--2695 19 2.1 19 100 0 78 48 5 20 25 1.70 3338--3398 30 2.0 30 93 6 106 60 0 0 39 0.97 3342--3392 25 2.1 24 85 3 66 62 0 0 37 0.95 4680--4710 12 2.6 12 100 0 62 54 9 0 35 1.33 4788--4817 15 2.0 15 100 0 60 46 6 26 20 1.75 4934--5008 18 4.1 18 92 3 114 29 21 14 34 1.93 18578--18611 15 2.3 15 94 0 59 38 17 8 35 1.81 19342--19464 5 25.0 5 78 14 69 52 0 0 47 1.00 19346--20073 24 30.5 24 70 20 135 58 0 1 39 1.09 19344--20161 21 40.0 21 75 18 425 59 0 1 38 1.08 19480--19585 8 14.2 8 77 21 106 63 0 10 26 1.26 19488--19559 13 5.3 13 81 15 92 62 0 13 23 1.31 19557--20068 2 272.5 2 73 12 408 58 0 0 41 1.00 19557--20150 36 15.9 38 75 15 341 60 0 0 39 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 24502--24535 13 2.7 13 95 4 61 17 5 0 76 0.98 24534--24576 19 2.3 19 95 0 77 34 0 4 60 1.17 24559--24587 14 2.1 14 100 0 58 34 0 6 58 1.25 24585--25183 2 335.0 2 64 23 180 48 0 1 49 1.15 24694--24996 9 36.2 9 68 26 74 48 0 0 51 1.03 24584--25014 45 9.3 48 70 22 232 48 0 0 51 1.02 24858--24966 15 7.9 13 73 19 62 56 0 0 43 0.99 24857--25183 21 14.8 23 68 22 88 48 0 3 47 1.21 24705--25077 109 3.6 105 74 14 271 48 0 1 50 1.10 25006--25091 21 4.0 21 91 5 118 50 0 6 43 1.29 25122--25205 27 3.2 27 83 5 93 50 1 4 44 1.31 24585--25183 25 22.0 28 65 21 201 48 0 1 49 1.15 25179--25304 7 17.1 7 70 15 60 58 0 14 26 1.41 25139--25280 31 4.7 29 75 13 108 54 0 11 33 1.41 25136--25277 8 18.0 8 74 13 80 53 0 11 34 1.42 29865--29928 32 2.0 32 100 0 128 37 15 15 31 1.89 30988--31012 11 2.3 11 100 0 50 12 16 0 72 1.13 32976--33015 20 2.0 20 100 0 80 45 0 15 40 1.46 33007--33083 15 5.1 15 100 0 154 53 0 25 20 1.46 33296--33331 16 2.2 16 100 0 72 36 0 16 47 1.47 34727--34811 28 3.0 28 98 1 161 57 7 0 35 1.26 34800--34825 13 2.0 13 100 0 52 53 0 0 46 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34874--34997 15 8.1 15 72 19 96 57 0 0 42 0.98 34899--35110 3 73.0 3 67 27 104 58 0 0 40 1.04 34859--35102 44 5.5 44 74 19 181 57 0 1 41 1.06 34888--35075 93 2.0 93 84 12 244 57 0 1 41 1.06 34739--35155 28 14.3 28 70 19 129 59 0 1 38 1.12 35041--35177 28 5.0 29 75 14 96 65 0 0 34 0.93 34895--35177 41 6.5 43 71 18 123 61 0 0 38 1.01 34940--35181 37 6.4 37 70 18 110 62 0 0 36 1.01 35082--35169 4 22.2 4 70 17 51 69 0 0 30 0.89 34835--35138 137 2.2 135 76 13 329 60 0 1 38 1.07 35128--35173 8 5.6 8 87 5 65 63 0 0 36 0.95 35132--35177 10 5.1 10 80 20 57 65 0 0 34 0.93 35123--35193 25 2.8 24 85 8 88 66 0 1 32 1.01 35106--35177 35 2.1 35 84 5 92 69 0 0 30 0.89 35212--35798 19 30.5 19 74 18 200 37 2 2 57 1.24 35274--35318 18 2.5 18 96 0 81 31 2 11 55 1.47 35314--35457 2 84.5 2 66 29 86 45 0 0 54 0.99 35210--35468 90 3.0 86 75 16 225 41 0 1 55 1.16 35313--35904 86 7.2 83 68 20 213 40 2 1 55 1.21 35214--35454 27 9.0 26 68 21 108 41 0 2 55 1.15 35314--35458 41 3.6 41 82 12 178 44 0 0 55 0.99 35210--35802 23 23.5 26 69 21 179 37 2 2 57 1.24 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 35435--35618 23 8.0 23 84 13 218 33 6 3 55 1.43 35207--35514 146 2.1 149 78 14 323 39 2 2 55 1.25 35435--35618 69 2.6 72 81 14 242 33 6 3 55 1.43 35575--35712 35 3.9 35 86 5 127 36 1 2 60 1.18 35552--35697 58 2.6 56 86 9 181 34 2 2 59 1.26 35627--35812 15 12.9 15 72 21 107 37 0 0 62 0.95 35627--35798 6 27.7 6 73 22 94 36 0 0 63 0.94 35803--36181 26 15.1 25 68 22 108 50 0 0 48 1.10 35799--36139 17 20.8 17 67 25 93 51 0 0 47 1.09 35628--36121 12 41.7 12 67 22 88 45 0 0 53 1.05 35922--36063 42 3.4 41 75 16 109 52 0 0 47 1.00 36012--36134 7 17.0 7 75 18 85 47 0 0 51 1.06 36007--36134 36 3.8 34 76 12 97 47 0 0 51 1.06 36058--36123 13 5.4 13 84 12 95 40 0 0 59 0.98 36064--36156 36 2.5 36 91 3 141 45 0 1 53 1.07 36334--38484 9 267.1 8 65 22 132 52 0 0 45 1.12 36334--36688 16 23.9 16 69 23 117 50 1 0 47 1.10 36343--36613 5 52.8 5 71 19 159 46 1 0 52 1.07 36388--36624 105 2.3 105 96 1 440 47 0 0 51 1.06 36588--36800 3 72.7 3 72 19 121 65 0 1 32 1.07 36344--38482 19 115.4 19 66 22 347 52 0 0 45 1.12 36388--36656 105 2.5 105 92 3 380 49 0 0 49 1.09 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 36588--36800 33 6.2 33 73 13 169 65 0 1 32 1.07 36588--36775 78 2.5 74 87 6 247 64 0 1 32 1.07 36656--36800 78 1.8 79 86 7 215 68 0 2 28 1.06 36799--36836 6 5.6 7 84 15 53 26 0 0 73 0.83 36839--36922 7 11.7 7 72 18 50 64 0 0 35 0.94 36486--38484 5 413.0 5 65 23 411 52 0 0 45 1.12 37387--37886 51 9.5 51 70 22 224 53 0 1 45 1.10 37873--38060 3 62.3 3 67 13 55 44 2 1 52 1.20 36955--38282 8 169.9 8 66 24 222 50 1 0 47 1.13 38403--38479 13 6.3 12 83 10 86 57 0 3 38 1.17 38373--38479 48 2.3 47 85 6 146 57 0 2 39 1.20 38552--38589 19 2.0 19 100 0 76 36 5 15 42 1.70 38600--38637 12 3.2 12 92 0 58 34 0 10 55 1.34 38594--38632 18 2.2 18 90 0 60 33 0 7 58 1.26 38626--38706 39 2.1 39 100 0 162 40 4 12 41 1.64 39768--39792 13 1.9 13 100 0 50 56 0 8 36 1.29 39785--39850 16 4.1 16 81 15 64 51 0 4 43 1.22 39811--39906 2 51.5 2 81 13 98 50 1 2 46 1.20 39811--40117 20 15.1 21 71 17 114 50 2 6 41 1.41 40012--40117 2 50.0 2 78 17 108 43 3 5 47 1.45 40012--40117 9 12.5 8 81 16 108 43 3 5 47 1.45 40018--40123 31 3.3 32 83 14 123 42 3 6 47 1.47 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 43144--43181 12 3.2 12 81 3 51 31 5 0 63 1.17 43143--43193 17 3.1 17 86 11 70 29 5 0 64 1.17 44051--44087 18 2.1 18 100 0 74 37 5 10 45 1.62 49788--49817 15 2.0 15 93 0 51 43 13 23 20 1.86 49874--49898 11 2.3 11 100 0 50 36 0 0 64 0.94 51975--52058 13 7.1 13 76 17 76 57 5 0 36 1.23 51975--53706 34 51.5 34 67 24 352 58 0 0 40 1.06 51975--53706 5 353.8 5 67 24 628 58 0 0 40 1.06 52026--52913 3 294.0 3 66 21 242 56 0 0 42 1.07 52035--53697 103 16.1 104 67 25 486 58 0 0 40 1.04 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2