NC_037247.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037247.1 Mentha spicata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152132
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6244--6292 10 4.6 10 78 14 53 40 0 10 48 1.37
6244--6272 11 2.7 11 94 5 51 37 0 10 51 1.36
8376--8400 13 1.9 13 100 0 50 0 28 0 72 0.86
9784--9820 16 2.3 16 95 0 65 43 5 5 45 1.49
30472--30509 19 2.0 19 100 0 76 31 15 10 42 1.81
39751--39779 15 1.9 15 100 0 58 17 34 34 13 1.89
45976--46033 13 4.6 13 73 18 52 56 0 0 43 0.99
45973--46032 18 3.4 18 82 13 81 55 0 0 45 0.99
47866--47908 21 2.0 23 86 9 63 25 11 0 62 1.29
58573--58604 16 2.0 16 93 0 55 25 21 15 37 1.93
58881--58923 17 2.6 16 88 3 59 53 6 2 37 1.41
87984--88038 24 2.5 22 85 8 67 14 23 12 49 1.78
88006--88073 21 3.2 21 77 8 75 11 22 10 55 1.65
90381--90470 18 5.2 18 94 4 141 31 7 25 35 1.84
90393--90469 9 8.6 9 72 0 64 31 9 27 32 1.88
98171--98233 11 5.8 11 96 1 110 30 6 15 47 1.71
98176--98260 17 5.1 16 70 20 59 29 4 20 45 1.71
103106--103131 13 2.0 13 100 0 52 46 0 0 53 1.00
106203--106263 31 2.0 31 93 0 104 40 21 9 27 1.85
115271--115305 18 1.9 18 88 0 52 40 11 14 34 1.82
125192--125243 14 3.9 14 82 5 63 0 15 5 78 0.92
125190--125225 18 2.1 17 89 5 54 0 16 2 80 0.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
125189--125243 27 2.0 27 86 6 76 0 14 5 80 0.89
129089--129149 31 2.0 31 93 0 104 27 9 21 40 1.85
132221--132246 13 2.0 13 100 0 52 53 0 0 46 1.00
137092--137126 17 2.0 18 94 5 63 48 22 0 28 1.51
137119--137181 11 5.8 11 96 1 110 47 15 6 30 1.71
137163--137208 23 2.0 23 86 0 65 60 6 6 26 1.46
144895--144958 9 7.1 9 74 0 65 34 28 6 31 1.82
144882--144971 18 5.2 18 94 4 141 35 25 7 31 1.84
147297--147350 21 2.6 21 82 11 74 59 11 20 9 1.59
147279--147368 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!