NC_037358.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037358.1 Arachis hypogaea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156391
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10539--10583 23 2.0 23 100 0 90 44 22 4 28 1.72
13806--13845 21 2.0 21 95 5 73 25 17 12 45 1.83
14870--14924 21 2.9 19 86 10 69 43 3 3 49 1.37
14885--14924 21 1.9 21 100 0 80 42 5 2 50 1.37
14875--14933 29 2.1 28 87 3 82 44 5 3 47 1.42
18815--18866 10 4.8 11 83 9 63 40 0 9 50 1.35
18815--18866 21 2.5 21 96 0 95 40 0 9 50 1.35
25181--25205 13 1.9 13 100 0 50 68 0 8 24 1.16
29516--29550 18 2.0 18 88 5 54 17 11 2 68 1.31
30309--30339 16 1.9 16 100 0 62 51 9 12 25 1.70
53359--53408 2 25.5 2 80 11 59 54 2 2 42 1.23
53359--53408 19 2.6 19 82 17 68 54 2 2 42 1.23
53359--53420 19 3.4 19 80 12 67 53 1 3 41 1.27
53359--53420 9 6.8 9 75 21 58 53 1 3 41 1.27
53359--53420 17 3.4 17 78 20 56 53 1 3 41 1.27
54710--54744 18 2.0 17 88 5 52 71 0 8 20 1.11
54838--54884 22 2.1 22 100 0 94 57 4 8 29 1.48
56194--56246 27 2.0 27 85 7 74 54 1 1 41 1.22
56270--56363 16 6.2 15 67 19 52 54 0 3 42 1.16
56875--56914 15 2.6 15 88 4 53 55 0 0 45 0.99
68514--68555 21 2.0 21 100 0 84 61 4 23 9 1.45
68994--69033 21 1.9 21 100 0 80 57 5 7 30 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
80826--80873 17 2.9 17 78 6 55 52 8 0 39 1.32
82180--82226 20 2.3 20 85 0 67 25 6 0 68 1.13
87791--87822 16 2.0 16 100 0 64 25 18 6 50 1.70
91029--91096 21 3.2 21 81 8 84 11 23 7 57 1.59
93442--93496 18 3.1 18 100 0 110 32 5 27 34 1.80
93442--93496 9 6.1 9 76 0 56 32 5 27 34 1.80
99081--99106 13 2.0 13 100 0 52 30 15 23 30 1.95
101366--101436 11 6.1 11 81 12 88 29 0 19 50 1.48
101355--101439 22 3.7 22 80 13 91 29 1 18 50 1.55
101364--101429 26 2.4 27 87 7 98 30 0 19 50 1.48
101367--101440 37 2.0 37 100 0 148 29 0 21 48 1.50
101366--101439 26 3.0 25 75 21 68 29 0 20 50 1.49
111266--111299 17 2.0 17 100 0 68 70 5 11 11 1.32
115025--115055 13 2.3 14 94 5 55 41 0 19 38 1.51
119144--119189 22 2.2 21 92 7 76 45 8 2 43 1.47
120468--120517 16 2.9 17 82 5 57 50 6 8 36 1.57
122922--122979 2 31.5 2 78 16 63 53 0 1 44 1.10
122922--122979 9 6.3 9 78 9 64 53 0 1 44 1.10
122949--122978 11 2.7 11 100 0 60 46 0 0 53 1.00
131039--131072 17 2.0 17 100 0 68 11 11 5 70 1.32
140899--140984 11 7.5 11 81 11 93 50 18 1 30 1.55
140903--140974 26 2.6 27 84 8 101 50 19 0 30 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140898--140971 37 2.0 37 100 0 148 48 21 0 29 1.50
140909--140955 15 3.1 15 80 20 53 48 21 0 29 1.50
140943--140990 11 4.4 11 84 10 53 54 12 4 29 1.56
143232--143257 13 2.0 13 100 0 52 30 23 15 30 1.95
148842--148896 18 3.1 18 100 0 110 34 27 5 32 1.80
148842--148896 9 6.1 9 76 0 56 34 27 5 32 1.80
151243--151310 21 3.3 20 82 8 82 55 7 25 11 1.61
154516--154547 16 2.0 16 100 0 64 50 6 18 25 1.70
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Tables: 1
The End!