NC_037410.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037410.1 Flacourtia indica isolate LJQ-ZL-2015-059 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156542
Tables: 1
This is table 1 of 1 ( 70 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
198--223 13 2.0 13 100 0 52 53 7 7 30 1.57
3687--3728 21 2.0 21 90 0 66 23 9 9 57 1.60
4621--4656 16 2.3 15 86 9 54 55 0 0 44 0.99
4621--4673 23 2.3 23 83 9 63 58 0 1 39 1.09
5703--5744 21 2.0 21 100 0 84 42 9 4 42 1.58
5777--5801 12 2.1 12 100 0 50 36 0 16 48 1.46
6154--6180 10 2.7 10 100 0 54 37 7 0 55 1.28
6153--6186 10 3.1 11 87 12 52 38 8 0 52 1.33
7335--7375 22 1.9 21 85 5 55 41 4 0 53 1.22
7368--7405 19 2.0 19 100 0 76 42 5 0 52 1.24
7372--7423 16 3.1 16 86 8 59 46 1 0 51 1.12
7406--7450 14 3.1 15 81 9 58 48 0 2 48 1.13
8569--8608 13 2.9 14 85 11 55 27 20 0 52 1.46
8846--8871 13 2.0 13 100 0 52 30 15 0 53 1.42
8848--8893 21 2.3 19 79 17 56 26 13 0 60 1.32
8882--8933 26 2.0 26 81 7 61 44 3 3 48 1.39
26036--26097 22 2.8 22 100 0 124 32 25 0 41 1.56
27331--27379 19 2.6 19 96 0 89 32 4 12 51 1.58
27334--27386 19 2.5 22 82 17 85 32 3 15 49 1.62
27763--27806 11 4.0 11 96 0 70 50 4 9 36 1.55
27983--28007 11 2.3 11 100 0 50 16 8 0 76 1.02
30051--30085 13 2.5 15 81 18 56 68 0 0 31 0.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30057--30087 13 2.4 13 100 0 62 70 0 0 29 0.87
30051--30105 28 2.0 28 82 13 69 69 0 1 29 0.99
30051--30105 13 3.9 14 84 13 51 69 0 1 29 0.99
31875--31902 13 2.2 13 100 0 56 28 14 0 57 1.38
32008--32035 12 2.3 12 100 0 56 32 0 7 60 1.24
32198--32228 16 1.9 16 100 0 62 64 3 12 19 1.41
36248--36286 19 2.1 19 90 0 60 46 5 7 41 1.55
36290--36332 22 2.0 22 91 8 72 53 0 16 30 1.43
36505--36534 15 2.0 15 100 0 60 33 0 13 53 1.40
36561--36587 13 2.1 13 100 0 54 22 7 7 62 1.46
42481--42522 19 2.3 18 84 11 59 59 0 7 33 1.25
42529--42554 13 2.0 13 100 0 52 69 15 0 15 1.20
48027--48066 12 3.3 12 100 0 80 57 0 7 35 1.27
48360--48391 15 2.1 15 100 0 64 25 21 6 46 1.74
48503--48538 18 2.0 18 94 0 63 27 19 16 36 1.93
50671--50696 7 3.7 7 100 0 52 42 0 0 57 0.98
50727--50752 12 2.2 12 100 0 52 65 0 0 34 0.93
51105--51140 9 4.0 9 100 0 72 44 22 0 33 1.53
54706--54732 12 2.2 12 100 0 54 59 7 7 25 1.51
59588--59621 17 2.0 17 88 0 50 26 14 8 50 1.72
60098--60125 13 2.2 13 100 0 56 14 14 0 71 1.15
70456--70484 14 2.1 14 100 0 58 65 0 27 6 1.18
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77103--77149 19 2.4 19 96 3 85 25 17 2 55 1.53
81060--81093 17 2.0 17 94 0 59 38 2 0 58 1.13
81113--81142 15 2.0 15 100 0 60 40 13 0 46 1.43
84141--84187 9 5.4 9 75 10 53 29 17 2 51 1.57
84134--84194 25 2.4 25 86 0 95 31 13 4 50 1.62
89759--89810 21 2.5 21 90 0 86 9 21 9 59 1.57
92175--92231 18 3.2 18 92 5 89 31 5 29 33 1.80
94374--94399 12 2.2 12 100 0 52 69 7 0 23 1.14
100490--100529 11 3.5 11 84 15 55 35 0 17 47 1.48
100492--100517 13 2.0 13 100 0 52 38 0 15 46 1.46
101107--101148 14 3.0 14 100 0 84 42 14 14 28 1.84
109478--109526 16 3.3 16 78 21 70 57 0 0 42 0.99
109498--109522 12 2.1 12 100 0 50 68 0 0 32 0.90
110315--110341 13 2.1 13 100 0 54 22 14 0 62 1.31
116608--116656 16 3.0 16 93 3 80 61 6 6 26 1.43
130688--130714 13 2.1 13 100 0 54 62 0 14 22 1.31
131507--131531 12 2.1 12 100 0 50 32 0 0 68 0.90
131503--131551 16 3.3 16 81 18 70 42 0 0 57 0.99
139881--139922 14 3.0 14 100 0 84 28 14 14 42 1.84
140152--140199 24 2.0 24 83 0 60 29 12 2 56 1.48
140500--140539 11 3.5 11 84 15 55 47 17 0 35 1.48
140512--140537 13 2.0 13 100 0 52 46 15 0 38 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146630--146655 12 2.2 12 100 0 52 23 0 7 69 1.14
148798--148854 18 3.2 18 92 5 89 33 29 5 31 1.80
151219--151270 21 2.5 21 90 0 86 59 9 21 9 1.57
151222--151290 21 3.1 22 85 6 77 57 8 21 11 1.60
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Tables: 1
The End!