NC_037447.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037447.1 Dimocarpus longan chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160833
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
237--278 19 2.3 19 80 15 52 50 16 9 23 1.75
10362--10401 17 2.4 17 91 0 62 25 12 2 60 1.45
15129--15164 14 2.5 15 95 4 65 22 5 11 61 1.50
29963--29988 13 2.0 13 100 0 52 23 15 0 61 1.33
30412--30448 17 2.2 17 90 0 56 64 2 21 10 1.37
38648--38717 36 1.9 36 85 5 97 65 0 5 28 1.15
49361--49401 15 2.7 15 88 0 55 41 21 17 19 1.90
57505--57550 23 2.0 23 95 0 83 28 17 6 47 1.72
61730--61768 19 2.1 19 95 0 69 58 2 7 30 1.39
61905--61952 17 2.7 19 78 15 57 70 2 16 10 1.24
79684--79720 17 2.2 17 100 0 74 24 16 5 54 1.63
83590--83614 13 1.9 13 100 0 50 64 0 4 32 1.12
85396--85437 21 2.0 21 100 0 84 38 19 14 28 1.90
92061--92112 21 2.5 21 93 0 86 7 23 11 57 1.59
94477--94536 18 3.3 18 97 0 111 26 13 26 33 1.93
96849--96873 12 2.1 12 100 0 50 36 16 8 40 1.77
102795--102832 18 2.1 18 95 0 67 21 10 7 60 1.54
107363--107437 38 2.0 37 94 2 132 33 22 24 20 1.97
111981--112025 22 2.1 22 95 4 83 40 26 20 13 1.89
116642--116673 16 2.0 16 100 0 64 62 6 12 18 1.50
119746--119794 24 2.0 24 96 0 89 51 10 4 34 1.55
125641--125665 12 2.1 12 100 0 50 24 16 0 60 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129664--129704 21 2.0 21 100 0 82 39 0 24 36 1.56
134517--134561 22 2.1 22 95 4 83 13 20 26 40 1.89
139105--139179 38 2.0 37 94 2 132 20 24 22 33 1.97
143710--143747 18 2.1 18 95 0 67 60 7 10 21 1.54
149669--149693 12 2.1 12 100 0 50 40 8 16 36 1.77
152006--152065 18 3.3 18 97 0 111 33 26 13 26 1.93
154430--154483 21 2.6 21 90 0 90 59 11 22 7 1.56
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Tables: 1
The End!