NC_037483.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037483.1 Atractylodes lancea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153201
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3771--3821 25 2.0 25 92 0 84 52 1 17 27 1.55
12196--12222 13 2.1 13 100 0 54 62 7 14 14 1.51
12452--12515 33 1.9 33 90 0 101 34 17 18 29 1.94
12589--12636 24 2.0 24 95 0 87 22 6 20 50 1.71
19091--19129 18 2.2 18 100 0 78 38 41 5 15 1.69
21052--21093 21 2.0 21 95 0 75 47 16 16 19 1.83
25357--25381 12 2.1 12 100 0 50 60 8 8 24 1.52
31923--31958 18 2.0 18 88 0 54 25 0 16 58 1.38
41908--41939 16 2.0 16 100 0 64 43 0 12 43 1.42
47582--47619 18 2.1 18 90 0 58 15 13 2 68 1.32
51154--51191 17 2.2 17 100 0 76 44 10 23 21 1.83
52210--52239 15 2.0 15 93 0 51 36 16 13 33 1.88
59269--59316 20 2.3 21 92 7 89 45 4 4 45 1.41
68113--68153 21 2.0 21 95 0 73 31 24 9 34 1.88
77183--77220 19 2.0 19 100 0 76 42 10 5 42 1.62
89096--89165 21 3.3 21 89 0 86 11 21 8 58 1.59
91492--91533 18 2.3 18 100 0 84 28 11 26 33 1.92
107326--107387 32 1.9 32 93 0 106 41 22 8 27 1.82
109432--109467 12 3.0 12 95 0 63 36 16 16 30 1.91
109622--109646 9 2.8 9 100 0 50 64 12 24 0 1.27
109610--109667 21 2.8 21 78 0 62 58 12 24 5 1.54
110124--110214 45 2.0 45 95 0 164 46 9 16 27 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110272--110315 21 2.1 21 95 0 79 52 20 2 25 1.58
112827--112855 12 2.5 12 94 5 51 55 13 13 17 1.70
112930--112971 21 2.0 21 100 0 84 19 0 33 47 1.49
113138--113225 30 2.9 30 89 3 133 36 4 29 29 1.77
113245--113315 30 2.6 26 77 16 88 47 12 7 32 1.68
113655--113690 18 2.0 18 100 0 72 50 5 11 33 1.61
125543--125574 16 2.0 16 100 0 64 50 0 6 43 1.27
130065--130126 32 1.9 32 93 0 106 27 8 22 41 1.82
145919--145960 18 2.3 18 100 0 84 33 26 11 28 1.92
148287--148341 21 2.6 21 97 0 101 60 5 23 10 1.51
148304--148356 21 2.5 21 87 0 70 58 9 18 13 1.61
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Tables: 1
The End!