NC_037494.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037494.1 Bombax ceiba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158997
Tables: 1
This is table 1 of 1 ( 94 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4950--5059 3 37.7 3 73 13 61 30 0 0 68 0.96
4941--5056 21 5.8 21 70 21 79 29 0 0 69 0.94
4943--5022 10 8.0 10 71 10 56 26 1 0 72 0.92
4976--5024 10 4.8 10 85 5 62 34 0 0 65 0.93
4984--5059 21 3.8 21 84 13 90 35 0 0 64 0.94
5695--5724 15 2.0 15 93 0 51 40 0 23 36 1.55
6742--6796 19 2.9 19 100 0 110 25 16 3 54 1.58
6886--6919 17 2.0 17 94 0 59 47 20 11 20 1.81
7963--7989 13 2.1 13 100 0 54 37 7 7 48 1.59
8501--8526 13 2.0 13 100 0 52 38 0 7 53 1.30
8529--8568 21 1.9 21 94 0 71 40 10 7 42 1.67
8576--8615 21 1.9 21 84 0 53 27 15 0 57 1.38
9845--9889 22 2.0 22 82 8 54 13 17 2 66 1.34
10357--10396 20 2.0 20 95 0 71 45 10 2 42 1.51
10417--10441 12 2.1 12 100 0 50 48 0 8 44 1.32
10438--10488 18 2.7 19 78 9 68 29 5 0 64 1.17
10438--10489 19 2.7 19 75 19 54 30 5 0 63 1.18
13571--13607 19 2.0 18 89 5 56 40 2 0 56 1.13
17302--17327 8 3.2 8 100 0 52 61 11 0 26 1.30
31315--31347 13 2.8 12 90 9 50 72 9 6 12 1.26
33372--33405 15 2.3 15 100 0 68 38 0 0 61 0.96
37631--37689 15 3.7 16 77 20 61 57 1 0 40 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
37684--37875 3 65.3 3 63 22 61 61 0 0 38 0.96
37697--37876 11 18.8 10 67 26 97 60 0 0 39 0.97
37684--37875 64 3.1 63 77 19 197 61 0 0 38 0.96
37674--37875 43 4.5 44 77 19 179 61 0 0 38 0.96
37869--37907 21 1.9 20 94 5 69 58 0 10 30 1.31
37880--37928 13 3.6 13 80 20 64 57 0 10 32 1.32
37860--37936 28 2.7 29 91 6 129 59 0 9 31 1.28
37966--38027 20 2.8 22 78 14 74 53 3 0 43 1.17
37978--38017 10 3.9 11 84 15 59 50 5 0 45 1.23
37976--38017 20 2.1 20 100 0 84 50 4 0 45 1.23
37979--38025 20 2.3 20 92 0 76 51 4 0 44 1.21
43711--43741 15 2.1 15 100 0 62 19 12 0 67 1.22
45333--45383 16 3.2 16 88 0 84 25 13 9 50 1.72
47358--47384 12 2.2 12 100 0 54 62 0 22 14 1.31
48657--48747 9 10.6 9 70 21 61 58 0 3 38 1.15
48657--48712 17 3.2 17 90 7 78 58 0 3 37 1.15
48739--48801 24 2.6 24 92 0 108 47 3 6 42 1.44
49251--49306 14 4.0 14 84 9 78 50 8 0 41 1.34
49255--49310 28 2.0 28 100 0 112 50 7 0 42 1.30
49316--49342 12 2.2 12 100 0 54 40 14 0 44 1.46
49401--49439 9 4.5 8 87 9 51 38 0 2 58 1.12
49401--49439 17 2.2 18 86 13 55 38 0 2 58 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49900--49943 18 2.4 18 100 0 88 72 0 13 13 1.12
49939--49974 18 2.0 18 88 0 54 44 2 52 0 1.15
53976--54005 13 2.2 14 94 5 53 23 10 0 66 1.21
54025--54053 13 2.2 13 100 0 58 31 6 0 62 1.22
54029--54097 13 5.2 13 80 13 68 31 8 1 57 1.38
54090--54121 11 2.9 11 100 0 64 43 0 0 56 0.99
54753--54779 10 2.7 10 100 0 54 70 0 11 18 1.16
58370--58402 14 2.4 14 94 0 57 36 3 0 60 1.12
58394--58433 20 2.0 20 100 0 80 35 5 5 55 1.44
58462--58555 23 3.9 25 69 20 58 35 8 0 56 1.30
58426--58554 32 3.8 32 75 22 104 32 10 0 57 1.32
58462--58535 23 3.4 23 75 17 95 33 9 0 56 1.31
58486--58544 9 7.0 9 76 18 56 33 10 0 55 1.33
58442--58571 41 3.2 41 89 8 178 34 9 0 56 1.31
63136--63185 14 3.4 14 86 8 55 44 6 4 46 1.47
67772--67808 11 3.5 11 88 7 58 62 0 8 29 1.24
67744--67810 21 3.3 19 83 10 71 59 0 10 29 1.31
72297--72335 21 1.9 21 94 5 71 30 25 10 33 1.89
72686--72728 7 5.4 8 79 20 54 76 0 11 11 1.02
72686--72726 16 2.6 16 100 0 82 75 0 12 12 1.05
72683--72736 16 2.9 19 79 15 60 75 0 12 11 1.04
76104--76148 22 2.0 22 95 0 81 55 0 2 42 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
87363--87413 13 3.0 19 68 31 60 45 7 11 35 1.70
89038--89090 14 3.6 14 84 5 70 45 1 0 52 1.11
89703--89733 14 2.2 14 100 0 62 29 12 6 51 1.65
93908--93976 21 3.3 21 87 2 95 11 24 8 55 1.64
96342--96431 18 5.2 18 88 4 123 31 7 25 35 1.84
99397--99442 22 2.0 22 87 8 65 47 2 4 45 1.34
104689--104716 14 2.0 14 100 0 56 14 14 0 71 1.15
104713--104763 6 9.2 6 79 16 56 33 3 13 49 1.61
104707--104759 27 2.0 27 100 0 106 32 7 11 49 1.67
112924--112984 32 1.9 32 96 0 113 39 21 9 29 1.85
123512--123537 10 2.6 10 100 0 52 80 0 11 7 0.89
125159--125202 22 2.0 22 86 8 63 36 2 22 38 1.67
130333--130383 25 2.1 24 88 3 75 25 5 1 66 1.24
130511--130556 21 2.0 24 88 12 71 21 13 4 60 1.49
130893--130932 21 1.9 21 100 0 80 62 0 7 30 1.23
135036--135096 32 1.9 32 96 0 113 29 9 21 39 1.85
143261--143313 27 2.0 27 100 0 106 49 11 7 32 1.67
143257--143307 6 9.2 6 77 16 56 49 13 3 33 1.61
143304--143331 14 2.0 14 100 0 56 71 0 14 14 1.15
148578--148623 22 2.0 24 87 8 69 45 4 2 47 1.34
151589--151666 18 4.3 18 90 0 120 33 26 8 30 1.87
151589--151678 36 2.6 36 85 5 123 35 25 7 31 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151589--151665 9 8.6 9 72 0 55 33 27 7 31 1.85
151589--151678 18 5.2 17 83 9 94 35 25 7 31 1.84
154044--154132 21 4.1 21 84 5 90 53 10 23 12 1.68
154044--154112 21 3.3 21 87 2 95 55 8 24 11 1.64
158287--158317 14 2.2 14 100 0 62 51 6 12 29 1.65
158930--158982 14 3.6 14 84 5 70 52 0 1 45 1.11
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Tables: 1
The End!