NC_037719.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037719.1 Euryale ferox chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159930
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
356--381 13 2.0 13 100 0 52 23 0 15 61 1.33
7075--7120 16 2.6 18 76 16 60 67 8 8 15 1.41
7080--7117 16 2.4 16 95 0 67 65 10 7 15 1.45
8215--8254 19 2.1 19 95 0 71 70 12 5 12 1.33
9635--9664 15 2.0 15 100 0 60 46 0 13 40 1.43
10096--10125 14 2.1 14 100 0 60 30 6 16 46 1.73
29026--29057 15 2.1 15 100 0 64 34 25 15 25 1.95
29058--29103 23 2.0 23 95 0 83 41 6 17 34 1.75
29674--29703 15 2.0 15 100 0 60 46 13 6 33 1.69
32052--32104 26 2.0 27 92 3 90 32 9 7 50 1.62
32835--32860 13 2.0 13 100 0 52 23 23 0 53 1.46
33616--33642 14 1.9 14 100 0 54 11 22 0 66 1.22
34204--34246 11 3.9 11 79 8 52 34 11 4 48 1.60
34203--34248 23 2.0 23 100 0 92 34 13 4 47 1.62
34210--34248 12 3.3 12 78 7 53 35 10 5 48 1.59
34780--34821 21 2.0 21 95 0 75 26 16 9 47 1.77
35536--35572 19 1.9 19 88 0 56 40 13 18 27 1.88
35694--35728 18 1.9 18 94 0 61 54 2 17 25 1.57
35716--35768 21 2.6 20 88 5 79 41 5 15 37 1.70
40062--40113 25 2.1 25 100 0 104 34 7 30 26 1.85
48278--48305 14 2.0 14 100 0 56 35 14 7 42 1.73
50067--50121 27 2.0 27 96 0 101 27 25 9 38 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54353--54383 15 2.1 15 100 0 62 45 6 6 41 1.55
55092--55146 24 2.2 25 93 3 94 29 3 20 47 1.67
63923--63948 13 2.0 13 100 0 52 53 0 0 46 1.00
73455--73497 21 2.0 21 86 0 59 30 25 13 30 1.94
92865--92900 18 2.0 18 100 0 72 33 11 33 22 1.89
94442--94510 21 3.1 21 85 10 86 15 21 8 53 1.69
95969--96017 21 2.3 20 80 13 53 30 14 26 28 1.95
96771--96821 24 2.1 24 100 0 102 29 11 25 33 1.91
114712--114758 22 2.1 22 100 0 94 55 0 8 36 1.31
117437--117461 13 1.9 13 100 0 50 44 0 40 16 1.47
129333--129380 12 4.0 12 100 0 96 16 33 25 25 1.96
129807--129912 18 5.9 18 98 0 203 16 21 21 40 1.91
130480--130515 18 2.0 18 100 0 72 16 22 16 44 1.86
132254--132330 18 4.3 18 93 3 129 16 22 6 54 1.65
132253--132369 36 3.2 36 85 9 139 17 21 5 55 1.63
132253--132369 18 6.3 19 76 13 102 17 21 5 55 1.63
132362--132929 21 27.0 21 95 0 983 25 9 18 45 1.80
152787--152837 24 2.1 24 100 0 102 33 25 11 29 1.91
153591--153639 21 2.3 20 80 13 53 28 26 14 30 1.95
155098--155166 21 3.1 21 85 10 86 53 8 21 15 1.69
156708--156743 18 2.0 18 100 0 72 22 33 11 33 1.89
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Tables: 1
The End!