NC_037838.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037838.1 Sisymbrium irio chloroplast J04 DNA, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154001
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
311--342 16 2.0 16 100 0 64 43 6 0 50 1.27
4662--4716 18 3.1 18 92 5 85 49 0 5 45 1.25
4714--4772 25 2.2 28 79 11 70 42 3 3 50 1.35
4751--4783 17 1.9 17 93 0 57 33 9 3 54 1.47
4919--4949 16 1.9 16 93 0 53 61 6 3 29 1.37
6392--6430 2 19.5 2 83 0 51 46 0 0 53 1.00
7976--8088 33 3.3 33 78 7 84 38 5 0 56 1.22
9747--9795 26 2.0 24 88 11 73 63 8 12 16 1.51
27246--27272 13 2.1 13 100 0 54 25 7 22 44 1.79
28387--28430 17 2.6 17 82 17 56 29 13 0 56 1.38
31970--32002 17 2.0 17 88 5 50 48 9 12 30 1.71
36099--36163 2 35.0 2 72 14 50 52 0 3 44 1.16
36100--36168 28 2.6 26 78 14 70 52 0 2 44 1.16
50160--50191 16 2.0 16 93 0 55 31 9 6 53 1.58
62726--62776 19 2.6 20 87 9 70 39 5 3 50 1.45
62766--62819 23 2.3 25 90 9 87 48 0 3 48 1.19
67535--67574 21 1.9 21 89 0 62 32 22 10 35 1.87
71255--71297 22 2.0 22 86 9 61 48 4 4 41 1.44
71719--71755 15 2.4 16 90 9 67 45 5 0 48 1.25
79518--79545 14 2.0 14 100 0 56 50 14 7 28 1.69
81366--81391 12 2.2 12 100 0 52 34 0 23 42 1.54
84603--84641 20 2.0 20 89 0 60 33 10 12 43 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88793--88888 24 4.3 22 90 6 124 12 20 12 54 1.70
88813--88905 21 4.3 21 86 8 109 12 22 9 54 1.67
88793--88906 42 2.6 43 83 8 140 13 21 10 54 1.68
91256--91313 18 3.4 17 88 6 75 32 6 22 37 1.81
107459--107519 32 1.9 32 96 0 113 40 24 9 24 1.85
118580--118619 13 3.2 13 74 25 50 22 0 7 70 1.12
118582--118625 11 3.8 11 85 11 61 27 2 6 63 1.31
118577--118625 24 2.0 24 92 0 80 26 2 6 65 1.27
130374--130434 32 1.9 32 96 0 113 24 9 24 40 1.85
146580--146625 18 2.6 18 92 0 74 34 23 8 32 1.86
146580--146637 18 3.4 17 88 6 66 37 22 6 32 1.81
148988--149100 24 5.1 21 88 6 95 53 10 22 13 1.69
148988--149080 21 4.3 21 85 10 109 54 9 22 12 1.67
149015--149100 24 3.7 24 92 4 133 52 12 20 13 1.74
153252--153290 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!