NC_037850.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037850.1 Prunus pedunculata voucher PPEDU20171125 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157851
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4823--4848 13 2.0 13 100 0 52 46 7 0 46 1.31
6938--7008 30 2.5 27 82 13 81 40 0 4 54 1.20
6935--7004 17 4.2 17 72 15 58 41 0 2 55 1.14
8487--8516 15 1.9 16 93 6 53 43 13 13 30 1.82
8532--8566 17 2.0 17 88 5 52 22 5 0 71 1.07
9743--9773 11 2.7 11 95 5 53 38 3 0 58 1.15
13138--13171 17 2.0 17 100 0 68 41 11 17 29 1.85
21086--21115 15 2.0 15 93 0 51 36 13 16 33 1.88
21091--21120 15 2.0 15 93 0 51 33 13 23 30 1.93
27655--27682 13 2.2 13 100 0 56 39 0 21 39 1.54
28796--28850 17 3.1 17 87 10 83 32 5 1 60 1.30
28803--28842 19 2.1 19 100 0 80 37 5 0 57 1.21
33924--33960 15 2.6 15 87 8 51 67 0 8 24 1.17
48171--48211 13 2.9 14 85 10 57 63 0 2 34 1.08
48779--48804 13 2.0 13 100 0 52 46 0 23 30 1.53
50204--50256 13 4.2 13 83 11 65 45 1 3 49 1.31
51364--51395 16 2.0 16 100 0 64 18 12 12 56 1.67
52863--52920 7 8.0 7 84 7 71 50 8 0 41 1.33
52865--52920 22 2.5 22 88 8 87 51 7 0 41 1.29
52863--52903 15 2.8 15 92 3 66 48 9 0 41 1.36
52864--53054 9 21.7 9 70 19 57 51 4 1 42 1.28
52950--53034 32 2.6 33 83 14 99 45 4 0 49 1.23
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52959--53002 21 2.0 23 91 8 74 40 4 0 54 1.21
52993--53056 22 2.9 22 82 11 76 45 3 0 51 1.17
52950--53055 36 3.1 34 75 17 89 46 3 0 50 1.19
53017--53060 22 2.0 22 100 0 88 45 0 0 54 0.99
53049--53078 15 2.0 15 100 0 60 33 0 6 60 1.23
52864--53055 2 103.5 2 67 21 62 51 4 1 43 1.28
58665--58700 10 3.6 10 84 0 54 33 0 0 66 0.92
58660--58700 20 2.0 20 100 0 82 29 0 0 70 0.87
67450--67484 17 2.1 17 88 0 52 34 5 11 48 1.63
71692--71728 15 2.5 15 95 0 65 56 0 5 37 1.22
76300--76335 18 2.0 18 100 0 72 38 5 11 44 1.63
83769--83808 20 2.0 20 100 0 80 15 15 5 65 1.44
91037--91104 21 3.2 21 82 0 82 11 22 7 58 1.57
93456--93507 18 2.9 18 94 0 95 32 7 28 30 1.85
96482--96532 17 3.1 16 78 16 59 52 7 0 39 1.30
96487--96524 16 2.5 16 87 8 53 50 5 0 44 1.24
101025--101050 12 2.2 12 100 0 52 7 7 0 84 0.77
109747--109810 31 2.1 31 93 0 110 40 25 7 26 1.82
116110--116157 13 3.6 14 86 13 75 45 0 0 54 0.99
116110--116158 19 2.5 19 96 3 89 46 0 0 53 1.00
116367--116403 18 2.1 17 95 5 65 56 5 2 35 1.36
128382--128425 21 2.1 21 100 0 88 45 4 9 40 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130101--130134 15 2.3 15 94 0 59 0 20 5 73 1.04
130106--130150 18 2.5 19 85 7 58 0 24 4 71 1.05
134094--134157 31 2.1 31 93 0 110 26 7 25 40 1.82
142854--142879 12 2.2 12 100 0 52 84 0 7 7 0.77
147374--147424 17 3.1 18 75 16 56 41 0 7 50 1.31
147380--147424 16 2.8 16 83 6 56 44 0 6 48 1.29
147380--147434 15 3.6 16 78 9 62 47 0 5 47 1.25
150397--150448 18 2.9 18 94 0 95 30 28 7 32 1.85
152801--152889 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!