NC_037948.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_037948.1 Eucommia ulmoides chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163586 Tables: 1 2 This is table 1 of 2 ( 136 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5540--5575 18 2.0 18 100 0 72 27 11 0 61 1.30 6801--7089 2 158.0 2 68 21 154 52 0 0 46 1.10 6786--7076 31 9.7 31 77 15 283 52 0 0 46 1.10 6805--7077 86 3.2 86 91 4 412 52 0 0 45 1.11 7080--7262 58 3.1 59 83 11 232 55 3 8 33 1.46 7132--7165 17 2.0 17 88 0 50 47 2 0 50 1.16 7134--7176 12 3.5 12 84 6 50 48 4 2 44 1.36 7359--7451 40 2.3 40 81 5 125 35 13 8 41 1.76 7436--7468 11 2.8 12 86 13 50 33 18 0 48 1.48 8095--8136 13 3.1 14 80 13 52 30 4 2 61 1.29 8098--8137 12 3.0 14 85 10 57 35 5 2 57 1.34 12690--12742 14 3.9 14 97 2 99 50 7 0 41 1.30 12739--12764 12 2.2 12 100 0 52 50 0 0 50 1.00 12742--12800 10 5.7 10 75 16 50 57 0 3 38 1.15 12907--12951 6 7.5 6 85 14 58 13 0 0 86 0.57 12906--12953 7 7.1 7 84 15 66 14 0 0 85 0.60 12906--12953 13 3.6 13 94 2 78 14 0 0 85 0.60 13319--13469 15 9.8 15 85 14 202 32 6 0 60 1.22 13306--13469 34 5.2 33 78 20 190 32 6 0 61 1.20 13304--13469 47 3.6 47 91 7 261 32 6 0 61 1.20 13472--13507 12 3.0 12 100 0 72 41 0 8 50 1.33 19178--19212 17 2.1 17 94 0 61 28 11 2 57 1.48 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 19416--19449 16 2.1 16 100 0 68 20 17 5 55 1.62 24271--24378 2 60.0 2 66 29 57 50 2 2 44 1.31 24288--24378 20 4.3 20 74 20 87 50 2 3 43 1.30 24286--24378 22 4.3 22 73 18 88 50 2 3 44 1.30 24286--24378 32 2.9 32 100 0 186 50 2 3 44 1.30 24411--24442 14 2.3 14 94 0 55 18 12 3 65 1.38 24407--24445 14 3.0 13 82 10 53 20 15 5 58 1.55 24686--24740 22 2.6 21 94 5 101 43 0 0 56 0.99 24689--24737 12 4.2 12 89 10 84 40 0 0 59 0.98 24686--24767 22 4.1 19 85 6 74 43 3 1 51 1.27 24686--24740 2 31.5 2 73 26 54 43 0 0 56 0.99 24733--24771 19 2.1 19 95 0 69 48 10 2 38 1.51 24736--24778 19 2.3 19 87 0 59 48 9 6 34 1.62 24776--24815 20 2.0 20 100 0 80 45 15 10 30 1.78 26399--26425 14 1.9 14 100 0 54 51 7 3 37 1.48 26622--26646 12 2.1 12 100 0 50 68 8 8 16 1.38 27519--27547 14 2.1 14 100 0 58 44 13 13 27 1.82 41485--41515 16 1.9 16 100 0 62 41 19 0 38 1.51 41612--41654 16 2.6 16 85 3 50 58 4 6 30 1.45 41717--41809 2 51.0 2 69 21 53 51 1 3 44 1.24 41753--41799 11 4.1 11 81 10 58 57 0 0 42 0.98 41746--41808 24 2.6 25 87 7 85 57 0 1 41 1.08 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 41745--41822 9 9.1 9 72 9 56 57 0 1 41 1.07 41753--41822 26 2.7 26 86 0 95 57 0 1 41 1.08 41745--41813 16 4.6 17 76 22 66 57 0 1 40 1.07 43551--43595 12 4.2 12 73 26 55 57 0 0 42 0.98 43545--43593 19 2.5 19 96 3 89 59 0 0 40 0.98 43604--43631 14 2.0 14 100 0 56 42 0 14 42 1.45 47107--47131 12 2.1 12 100 0 50 32 24 0 44 1.54 47550--47591 22 1.9 22 90 0 66 61 11 4 21 1.48 47753--47782 15 2.0 15 100 0 60 40 0 0 60 0.97 47795--47839 22 2.0 22 87 8 65 68 4 2 24 1.19 49832--49863 15 2.1 15 100 0 64 25 6 0 68 1.12 49831--49868 15 2.8 13 85 14 58 28 7 0 63 1.23 51095--51147 22 2.4 22 96 0 97 28 11 0 60 1.31 52333--52434 21 4.9 21 85 0 141 28 16 23 31 1.96 52541--52578 17 2.2 17 100 0 76 15 5 0 78 0.91 52620--52671 9 6.1 9 84 13 65 55 3 0 40 1.18 52641--52670 15 2.0 15 93 0 51 60 3 0 36 1.14 53786--53841 15 3.9 15 81 13 73 32 5 5 57 1.44 57082--57177 13 7.2 14 86 9 139 17 10 0 71 1.12 57082--57182 40 2.5 40 100 0 202 16 10 0 72 1.12 57301--57332 14 2.3 14 100 0 64 43 0 0 56 0.99 57313--57379 11 6.2 11 74 22 61 44 5 1 47 1.36 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 60191--60224 13 2.7 13 86 4 52 8 0 11 79 0.94 60987--61051 19 3.8 19 66 26 54 69 12 3 15 1.31 60979--61065 31 2.8 32 96 3 167 68 12 2 16 1.30 61548--61575 14 2.0 14 100 0 56 57 0 0 42 0.99 61707--61754 19 2.5 19 93 3 78 16 29 0 54 1.43 62511--62578 30 2.3 30 89 0 100 14 55 11 17 1.68 62511--62560 15 3.3 15 100 0 100 16 58 8 18 1.62 62645--62746 45 2.3 45 98 0 195 24 29 28 17 1.97 62869--62959 36 2.5 36 100 0 182 21 29 14 34 1.93 64364--64451 23 3.7 23 84 11 108 19 6 0 73 1.05 64354--64442 34 2.7 33 86 5 119 19 5 0 75 1.00 64364--64433 11 6.4 11 88 6 106 20 5 0 74 1.02 64354--64450 11 8.3 11 78 15 72 18 6 0 75 1.01 64459--64528 25 2.8 25 87 8 115 18 51 12 17 1.76 64509--64564 18 3.1 18 100 0 112 21 46 16 16 1.84 64685--64747 21 3.0 21 100 0 126 28 4 19 47 1.69 64861--64910 25 2.0 25 100 0 100 40 12 24 24 1.88 70400--70430 14 2.2 14 100 0 62 51 6 6 35 1.53 85162--85210 24 2.0 24 100 0 98 44 8 12 34 1.71 87360--87403 21 2.1 21 100 0 88 25 18 18 38 1.92 87365--87410 21 2.2 21 92 0 74 30 13 17 39 1.87 88708--88754 24 2.0 24 95 0 85 38 2 14 44 1.58 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 91818--91870 21 2.4 21 78 9 52 13 20 11 54 1.69 91835--91877 21 2.0 21 86 4 59 11 16 11 60 1.59 95413--95543 36 3.6 36 96 0 235 30 12 40 16 1.85 95522--95572 15 3.8 15 69 28 51 41 3 37 17 1.68 95513--95577 24 2.7 24 97 0 121 41 4 38 15 1.68 100500--100527 14 2.0 14 100 0 56 28 14 7 50 1.69 101516--101561 23 2.0 23 100 0 92 8 56 0 34 1.30 101884--101972 23 4.0 23 82 8 103 23 10 12 53 1.68 101957--101992 18 2.0 18 94 0 63 30 8 16 44 1.77 106984--107019 18 2.0 18 100 0 72 22 27 16 33 1.95 111818--111867 15 3.3 15 100 0 100 54 6 12 28 1.60 111809--111867 30 2.0 30 93 0 100 54 8 11 25 1.65 112571--112644 27 2.6 27 80 6 85 36 22 9 31 1.86 112730--112814 21 4.0 21 81 6 109 32 15 25 25 1.95 115498--115528 15 2.1 15 100 0 62 12 12 0 74 1.08 116872--116946 36 2.1 36 97 0 141 44 13 18 24 1.85 117552--117606 27 2.0 27 100 0 110 29 14 14 41 1.85 117828--117916 22 4.0 22 92 0 142 40 10 20 29 1.85 117828--117916 44 2.0 44 95 0 160 40 10 20 29 1.85 120626--120655 15 2.0 15 93 0 51 60 0 10 30 1.30 122084--122117 9 4.0 9 85 14 54 44 0 20 35 1.52 122084--122115 16 2.0 16 100 0 64 43 0 18 37 1.51 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 122459--122484 13 2.0 13 100 0 52 30 23 30 15 1.95 123833--123861 14 2.1 14 100 0 58 31 13 6 48 1.69 127490--127517 14 2.0 14 100 0 56 50 14 0 35 1.43 129230--129259 15 2.0 15 100 0 60 26 20 0 53 1.46 129253--129293 13 3.1 13 85 3 55 29 9 2 58 1.43 129254--129295 14 3.1 14 86 3 59 30 9 2 57 1.44 129678--129712 15 2.3 15 100 0 70 40 5 20 34 1.76 132443--132531 22 4.0 22 92 0 142 29 20 10 40 1.85 132443--132531 44 2.0 44 95 0 160 29 20 10 40 1.85 132752--132806 27 2.0 27 100 0 110 41 14 14 29 1.85 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2