NC_038088.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_038088.1 Ligusticum sinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148512
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8544--8585 18 2.3 18 91 0 66 45 7 9 38 1.64
19449--19545 49 2.0 49 89 0 149 29 17 20 31 1.96
26477--26505 14 2.1 14 100 0 58 34 0 6 58 1.25
30499--30528 14 2.1 14 100 0 60 36 6 40 16 1.75
36172--36209 19 2.0 19 100 0 76 36 10 21 31 1.87
46168--46215 13 3.8 13 83 10 64 39 8 2 50 1.44
46175--46202 11 2.5 11 100 0 56 39 7 0 53 1.28
46168--46215 24 2.0 24 91 0 78 39 8 2 50 1.44
46789--46856 23 3.0 23 79 8 61 36 4 0 58 1.18
51710--51753 22 2.0 22 100 0 88 40 9 18 31 1.81
61749--61775 14 1.9 14 100 0 54 40 14 7 37 1.74
67601--67650 24 2.1 24 92 0 82 48 8 4 40 1.51
67741--67781 21 2.0 21 90 0 64 26 26 12 34 1.92
74007--74043 19 1.9 19 88 0 56 56 10 8 24 1.60
81560--81593 14 2.4 14 90 5 50 38 2 2 55 1.30
88163--88230 21 3.2 21 77 8 75 11 22 8 57 1.61
89341--89384 15 2.9 15 93 0 70 27 34 13 25 1.93
90601--90720 18 6.7 18 97 0 222 28 9 28 34 1.88
106731--106796 32 2.1 32 97 0 123 40 24 9 25 1.84
113375--113404 13 2.3 13 100 0 60 33 0 13 53 1.40
114063--114096 14 2.5 14 90 4 52 52 0 5 41 1.25
131334--131399 32 2.1 32 97 0 123 25 9 24 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146635--146659 12 2.1 12 100 0 50 0 28 16 56 1.41
146803--146838 18 2.0 18 100 0 72 11 11 22 55 1.66
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Tables: 1
The End!