NC_039429.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039429.1 Quercus acutissima chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161127
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5367--5400 17 2.0 17 94 0 59 26 5 20 47 1.73
6818--6859 7 6.1 7 78 15 52 57 0 2 40 1.12
6818--6847 12 2.5 12 94 0 51 53 0 0 46 1.00
6818--6864 19 2.5 19 86 6 60 57 0 2 40 1.11
7330--7365 18 2.0 18 100 0 72 33 11 11 44 1.75
7871--7907 15 2.4 16 86 9 58 59 10 8 21 1.56
8572--8603 16 2.0 16 93 0 55 43 18 3 34 1.66
11402--11434 9 3.8 9 84 8 50 42 0 0 57 0.98
11404--11441 17 2.2 17 100 0 76 39 0 0 60 0.97
11855--11888 12 2.8 12 95 0 59 32 2 0 64 1.08
15058--15100 21 2.0 21 95 0 77 46 6 13 32 1.71
16677--16710 15 2.2 16 89 5 52 35 2 2 58 1.28
16677--16728 24 2.2 24 82 0 59 36 3 1 57 1.28
17658--17685 14 2.0 14 100 0 56 42 21 0 35 1.53
32343--32377 17 2.1 17 88 0 52 34 5 11 48 1.63
33153--33182 14 2.1 14 100 0 60 40 6 0 53 1.27
35862--35901 20 2.0 20 85 14 55 47 0 5 47 1.24
40817--40852 17 2.1 17 89 0 54 41 2 5 50 1.40
40824--40859 17 2.1 17 89 0 54 36 2 5 55 1.38
41039--41078 20 2.0 21 95 5 73 50 0 5 45 1.23
41045--41085 20 2.0 20 85 0 55 48 2 7 41 1.44
47256--47302 22 2.1 22 100 0 94 44 12 0 42 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56320--56365 15 3.1 15 78 12 51 32 10 0 56 1.34
56362--56387 13 2.0 13 100 0 52 53 15 7 23 1.67
71059--71107 19 2.6 19 83 0 62 67 0 18 14 1.23
77535--77576 18 2.3 18 95 0 75 38 7 4 50 1.51
95209--95276 21 3.2 21 82 0 82 11 22 7 58 1.57
104822--104847 12 2.2 12 100 0 52 7 7 0 84 0.77
105333--105370 18 2.1 18 100 0 76 26 5 5 63 1.37
113547--113607 31 2.0 31 96 0 113 39 22 9 27 1.86
117930--117971 20 2.0 21 86 13 61 54 21 0 23 1.44
118843--118869 13 2.1 13 100 0 54 92 0 0 7 0.38
124959--124999 20 2.0 20 95 0 73 34 4 0 60 1.18
137944--138004 31 2.0 31 96 0 113 27 9 22 39 1.86
146181--146218 18 2.1 18 100 0 76 63 5 5 26 1.37
146704--146729 12 2.2 12 100 0 52 84 0 7 7 0.77
156276--156364 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!