NC_039452.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039452.1 Pulsatilla chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162052
Tables: 1
This is table 1 of 1 ( 60 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1046--1171 48 2.7 49 76 13 129 59 2 1 36 1.20
1165--1209 18 2.6 18 86 10 58 55 0 6 37 1.26
1185--1271 45 1.9 46 83 6 115 64 1 4 29 1.21
1254--1292 20 2.0 20 94 0 69 69 0 10 20 1.17
3167--3201 16 2.2 16 100 0 70 37 5 17 40 1.73
3564--3594 14 2.2 14 100 0 62 41 6 19 32 1.77
5761--5799 19 2.1 19 95 0 69 64 5 12 17 1.46
12433--12470 19 2.0 19 100 0 76 42 0 21 36 1.53
22372--22501 55 2.4 54 79 18 151 43 9 5 41 1.59
22990--23022 13 2.5 13 95 0 57 24 6 0 69 1.10
23263--23320 16 3.4 16 68 13 53 44 3 0 51 1.18
23285--23339 23 2.3 24 96 3 103 47 3 0 49 1.19
26478--26508 12 2.6 12 94 0 53 64 0 3 32 1.09
27649--27683 17 2.1 17 100 0 70 54 5 5 34 1.48
28742--28766 12 2.1 12 100 0 50 24 8 8 60 1.52
42744--42790 15 3.0 15 82 11 58 19 10 0 70 1.16
43027--43062 15 2.4 15 100 0 72 52 0 0 47 1.00
43168--43199 16 2.0 16 100 0 64 31 18 6 43 1.75
43958--44010 11 4.2 13 73 21 51 47 1 0 50 1.12
46390--46422 16 2.1 16 100 0 66 18 39 6 36 1.75
52408--52454 20 2.2 20 85 7 58 36 8 0 55 1.31
52420--52460 20 2.0 20 100 0 82 36 4 0 58 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52566--52599 15 2.3 15 90 10 52 55 0 0 44 0.99
52596--52646 9 6.0 9 86 13 81 64 11 0 23 1.26
52596--52645 16 3.1 16 86 13 75 64 12 0 24 1.27
52596--52646 25 2.0 26 96 3 95 64 11 0 23 1.26
53299--53340 5 8.2 5 80 15 50 64 0 0 35 0.94
53284--53345 26 2.3 27 81 8 74 72 0 1 25 0.94
53284--53348 27 2.4 27 82 7 80 70 0 1 27 0.96
53299--53341 17 2.8 16 82 10 54 65 0 0 34 0.93
61028--61055 14 2.0 14 100 0 56 14 0 7 78 0.95
61217--61254 20 1.9 20 94 0 67 39 7 18 34 1.80
65447--65496 16 3.1 16 81 13 59 50 0 0 50 1.00
69885--69943 3 19.0 3 75 25 52 62 1 0 35 1.05
69877--69924 23 2.0 24 92 4 80 60 4 0 35 1.16
69887--69945 16 3.9 16 78 17 72 62 1 0 35 1.05
69868--69943 29 2.5 29 89 8 107 60 3 0 35 1.15
72456--72499 23 1.9 23 100 0 88 13 40 4 40 1.65
91124--91192 21 3.2 22 80 12 81 11 24 8 55 1.64
93569--93647 18 4.6 18 93 4 128 32 6 25 35 1.81
93581--93639 9 6.6 9 78 0 64 33 6 27 32 1.83
100970--100997 13 2.2 13 100 0 56 21 14 0 64 1.29
101524--101568 22 2.0 22 100 0 90 24 13 4 57 1.54
101558--101586 14 2.0 15 93 6 51 34 0 0 65 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113482--113513 15 2.1 15 100 0 64 46 12 15 25 1.81
116036--116085 24 2.0 25 92 3 84 54 0 6 40 1.25
117775--117809 17 2.1 17 100 0 70 22 5 0 71 1.07
119724--119775 25 2.1 25 100 0 104 34 7 7 50 1.60
125030--125088 14 4.1 14 82 8 82 61 0 11 27 1.31
126944--126973 15 2.0 15 100 0 60 20 26 6 46 1.75
128113--128138 12 2.2 12 100 0 52 61 7 0 30 1.24
130764--130804 20 2.0 20 100 0 82 46 9 0 43 1.36
130814--130864 14 3.6 14 81 5 57 74 3 0 21 0.98
142390--142418 14 2.0 15 93 6 51 65 0 0 34 0.93
142408--142452 22 2.0 22 100 0 90 57 4 13 24 1.54
142979--143006 13 2.2 13 100 0 56 64 0 14 21 1.29
150336--150395 9 6.7 9 76 0 66 33 26 6 33 1.83
150329--150407 18 4.6 18 93 4 128 35 25 6 32 1.81
152784--152852 21 3.2 21 72 20 70 55 8 24 11 1.64
152785--152832 21 2.3 21 89 3 71 54 10 25 10 1.66
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Tables: 1
The End!