NC_039572.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039572.1 Gentiana dahurica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148803
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
193--226 17 2.0 17 94 0 59 47 0 8 44 1.34
237--262 13 2.0 13 100 0 52 46 7 0 46 1.31
7475--7499 12 2.1 12 100 0 50 52 0 24 24 1.48
13899--13926 14 2.0 14 100 0 56 35 14 7 42 1.73
25662--25686 12 2.1 12 100 0 50 32 0 32 36 1.58
29808--29855 24 2.0 24 91 0 78 47 2 14 35 1.56
34822--34848 12 2.2 12 100 0 54 44 0 0 55 0.99
34868--34894 11 2.5 11 100 0 54 55 0 7 37 1.28
46407--46436 15 2.0 15 100 0 60 20 13 6 60 1.55
55262--55289 14 2.0 14 100 0 56 21 7 0 71 1.09
56925--56954 15 1.9 16 93 6 53 40 6 0 53 1.27
59454--59496 14 2.9 14 89 6 59 41 18 9 30 1.82
62714--62738 12 2.1 12 100 0 50 64 8 8 20 1.46
65051--65080 15 2.0 15 100 0 60 13 26 6 53 1.64
65566--65606 21 2.0 21 90 0 64 34 26 7 31 1.84
69965--69992 14 2.0 14 100 0 56 35 14 7 42 1.73
83401--83438 20 1.9 20 88 0 58 39 10 21 28 1.86
88411--88463 15 3.5 15 100 0 106 37 5 15 41 1.70
88455--88494 18 2.2 18 100 0 80 30 10 25 35 1.88
103797--103859 31 2.0 31 90 0 99 42 22 9 25 1.83
104305--104340 18 2.0 18 100 0 72 44 16 16 22 1.86
125618--125653 18 2.0 18 100 0 72 22 16 16 44 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126099--126161 31 2.0 31 90 0 99 25 9 22 42 1.83
141464--141503 18 2.2 18 100 0 80 35 25 10 30 1.88
141495--141547 15 3.5 15 100 0 106 41 15 5 37 1.70
146520--146557 20 1.9 20 88 0 58 28 21 10 39 1.86
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Tables: 1
The End!