NC_039592.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039592.1 Toona ciliata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159502
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9434--9477 22 2.0 22 81 0 52 50 4 4 40 1.43
16961--16992 15 2.1 15 94 0 55 31 9 15 43 1.78
30565--30612 19 2.5 19 96 0 87 29 8 25 37 1.85
31440--31465 13 2.0 13 100 0 52 38 15 7 38 1.76
38652--38684 17 1.9 17 100 0 66 60 6 12 21 1.53
51572--51621 25 2.0 25 100 0 100 32 8 0 60 1.26
51572--51615 15 3.3 15 70 29 53 27 9 0 63 1.24
62063--62099 19 1.9 19 94 0 65 62 2 10 24 1.41
71556--71594 21 1.9 21 89 5 62 30 23 10 35 1.88
75867--75892 13 2.0 13 100 0 52 53 7 7 30 1.57
92521--92582 21 2.7 24 70 14 67 12 22 11 53 1.71
94948--95019 18 4.2 18 92 5 105 30 8 25 36 1.85
102706--102743 12 3.2 12 85 11 51 7 5 0 86 0.69
103238--103275 18 2.1 18 95 0 67 23 7 5 63 1.42
107817--107888 38 1.9 37 94 2 126 31 22 23 22 1.98
111416--111481 32 2.1 32 97 0 123 40 24 9 25 1.84
114160--114198 19 2.1 19 100 0 78 53 15 10 20 1.70
117833--117861 14 2.1 14 100 0 58 20 13 6 58 1.58
122635--122668 17 2.0 17 100 0 68 47 17 5 29 1.71
135221--135286 32 2.1 32 97 0 123 25 9 24 40 1.84
138814--138885 38 1.9 37 94 2 126 22 23 22 31 1.98
143427--143464 18 2.1 18 95 0 67 63 5 7 23 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143963--144026 19 3.3 19 73 2 65 79 0 12 7 0.92
143959--143996 12 3.2 12 85 7 51 86 0 5 7 0.69
151683--151742 18 3.3 18 97 0 111 33 26 10 30 1.89
151683--151754 18 4.2 17 92 5 85 36 25 8 30 1.85
154120--154181 21 2.8 22 73 9 63 53 11 22 12 1.71
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Tables: 1
The End!