NC_039621.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039621.1 Sarcandra glabra chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158900
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7546--7581 18 2.0 18 100 0 72 38 11 11 38 1.76
9571--9607 18 2.1 18 94 0 65 29 8 5 56 1.51
9551--9613 31 2.1 30 81 3 72 31 6 3 58 1.39
9601--9636 17 2.1 17 100 0 72 50 0 5 44 1.25
15009--15048 20 2.0 20 90 9 64 45 20 20 15 1.86
15412--15447 16 2.2 16 100 0 72 30 11 19 38 1.86
18822--18856 18 1.9 18 94 0 61 34 5 14 45 1.68
28772--28800 14 2.1 14 100 0 58 55 6 6 31 1.53
34108--34240 43 3.1 43 100 0 266 22 22 21 33 1.97
34730--34767 2 19.5 2 84 15 53 47 0 2 50 1.15
55727--55761 16 2.3 15 95 5 61 37 14 5 42 1.69
63049--63102 9 5.6 10 77 22 62 40 9 1 48 1.46
63055--63102 20 2.6 19 81 18 57 41 8 0 50 1.33
71790--71833 21 2.1 21 91 0 70 29 22 13 34 1.93
75451--75480 15 2.0 15 100 0 60 40 0 20 40 1.52
84380--84424 15 3.3 15 70 23 53 33 0 8 57 1.30
84378--84430 26 2.0 26 100 0 106 33 0 7 58 1.26
84383--84444 26 2.4 26 84 7 74 37 3 4 54 1.38
85665--85697 14 2.4 14 94 0 57 33 15 3 48 1.60
92855--92943 21 4.1 21 92 5 135 13 25 10 50 1.73
94516--94559 21 2.1 21 82 0 52 31 15 25 27 1.96
95322--95432 24 4.6 24 89 0 168 35 8 26 30 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114596--114645 24 2.1 24 92 0 82 20 30 16 34 1.94
114980--115029 21 2.5 20 87 12 77 40 18 20 22 1.92
114989--115032 21 2.1 21 100 0 88 43 18 18 20 1.89
115867--115931 33 2.0 34 85 11 91 50 9 15 24 1.73
116448--116501 24 2.3 25 75 12 69 55 11 12 20 1.67
117667--117708 21 2.0 21 100 0 84 57 19 19 4 1.58
151481--151601 24 5.0 24 87 0 170 32 25 7 34 1.84
151481--151601 48 2.5 48 94 0 206 32 25 7 34 1.84
152354--152397 21 2.1 21 82 0 52 27 25 15 31 1.96
153970--154058 21 4.1 21 92 5 135 50 10 25 13 1.73
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Tables: 1
The End!