NC_039708.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039708.1 Dioscorea bulbifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153075
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4274--4318 12 3.8 12 88 11 74 24 17 0 57 1.40
4274--4321 24 2.0 24 100 0 96 25 16 0 58 1.38
6359--6384 13 2.0 13 100 0 52 23 23 7 46 1.78
7341--7392 17 2.9 18 88 5 63 30 3 0 65 1.10
7358--7392 17 2.1 17 100 0 70 34 0 0 65 0.93
7387--7503 7 16.3 7 72 15 69 57 2 3 36 1.29
7388--7436 24 2.0 24 92 0 80 63 0 0 36 0.95
7390--7435 17 2.8 17 93 6 78 63 0 0 36 0.95
7447--7478 16 2.0 16 93 0 55 43 9 6 40 1.62
7685--7716 16 2.0 16 93 0 55 40 21 0 37 1.54
11555--11587 17 2.0 17 88 5 50 18 12 3 66 1.36
15572--15596 13 1.9 13 100 0 50 8 20 0 72 1.10
27177--27203 14 1.9 14 100 0 54 51 0 7 40 1.30
27882--27931 24 2.0 25 96 3 93 28 10 4 58 1.49
45974--46041 17 4.1 17 81 11 95 44 0 0 55 0.99
45971--46039 27 2.6 26 74 17 70 42 0 0 57 0.98
45980--46050 17 4.2 17 73 10 65 47 0 0 52 1.00
46040--46081 16 2.6 16 96 3 75 57 0 0 42 0.99
58297--58332 18 2.0 18 88 0 54 33 13 13 38 1.85
58344--58383 21 2.0 21 95 5 73 72 0 10 17 1.11
62694--62738 12 4.0 12 77 16 60 28 6 8 55 1.56
62698--62739 21 2.0 21 100 0 84 33 4 9 52 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64697--64734 19 2.0 19 100 0 76 57 0 15 26 1.38
67096--67139 21 2.1 21 86 0 61 31 22 11 34 1.90
81271--81316 16 2.7 17 75 18 51 26 4 0 69 1.07
88129--88197 21 3.3 21 97 0 129 13 30 8 47 1.72
110402--110443 21 2.0 21 100 0 84 42 14 4 38 1.66
110406--110460 21 2.6 21 88 0 74 45 9 7 38 1.64
116521--116558 19 2.0 19 100 0 76 21 15 5 57 1.57
124773--124815 16 2.8 15 82 13 52 51 9 0 39 1.34
148105--148173 21 3.3 21 97 0 129 47 8 30 13 1.72
148105--148194 21 4.1 21 92 4 126 48 10 27 13 1.74
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Tables: 1
The End!