NC_039748.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039748.1 Dipsacus asper voucher KIOM201701018837 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160530
Tables: 1
This is table 1 of 1 ( 70 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6305--6346 21 2.0 21 100 0 84 42 14 14 28 1.84
8680--8738 17 3.6 17 71 17 61 40 10 8 40 1.69
23769--23798 15 2.0 15 100 0 60 40 13 20 26 1.89
26786--26815 15 2.0 15 100 0 60 46 13 6 33 1.69
28291--28323 16 2.1 16 100 0 66 39 18 12 30 1.87
29781--29810 15 2.0 15 93 0 51 23 26 3 46 1.68
32147--32407 137 1.9 137 94 0 459 34 16 18 30 1.93
38516--38569 27 2.0 27 96 0 99 29 29 5 35 1.80
58979--59178 111 1.8 110 96 1 373 41 12 21 26 1.87
59401--59475 15 5.0 15 90 3 107 18 14 14 52 1.75
59473--59527 24 2.3 24 83 0 65 23 16 30 29 1.96
59535--59613 33 2.4 33 95 0 140 34 15 27 22 1.94
59838--59934 48 2.0 48 95 0 176 40 16 22 20 1.91
60190--60230 15 2.7 15 96 0 73 14 21 29 34 1.93
60190--60236 15 3.1 15 84 6 60 14 19 31 34 1.92
60225--60360 33 4.1 33 93 0 227 34 16 25 23 1.95
60265--60474 114 1.8 114 93 0 366 36 15 23 24 1.94
60375--60487 33 3.4 33 98 0 217 35 15 24 23 1.94
62014--62060 20 2.3 20 85 7 60 51 8 0 40 1.33
68131--68169 20 2.0 20 94 0 69 5 5 5 84 0.86
70157--70190 17 2.0 17 100 0 68 47 11 5 35 1.65
71193--71253 21 2.9 21 97 0 113 26 34 16 22 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71450--71549 21 4.8 21 96 0 173 47 13 18 22 1.82
71525--71603 27 2.9 27 96 0 140 54 13 13 17 1.71
71442--71576 21 6.1 21 85 10 162 48 12 17 21 1.79
71579--71637 21 2.8 22 84 7 77 62 10 11 15 1.54
73347--73399 24 2.3 23 93 3 88 33 9 15 41 1.79
73434--73468 18 1.9 18 100 0 70 45 17 11 25 1.81
87326--87402 39 2.0 39 89 0 118 22 18 14 45 1.85
87525--87573 24 2.0 24 96 0 89 26 16 16 40 1.89
90473--90651 39 4.6 39 99 0 349 32 18 7 41 1.79
90612--90866 51 5.0 51 96 0 449 31 14 10 43 1.79
91686--91737 18 2.9 18 100 0 104 46 9 23 21 1.80
92845--92913 21 3.1 22 85 8 77 11 23 11 53 1.69
92867--92913 21 2.2 21 96 0 85 10 21 10 57 1.62
93160--93372 105 2.0 105 100 0 426 35 22 15 26 1.94
94927--94956 15 2.0 15 100 0 60 60 0 26 13 1.34
94960--95059 18 5.6 18 91 4 148 17 5 56 22 1.60
95886--95925 15 2.7 15 96 0 71 37 5 30 27 1.78
95885--95953 15 4.6 15 83 0 66 33 2 36 27 1.72
97356--97396 15 2.7 15 96 0 73 48 0 24 26 1.51
110068--110124 19 3.0 19 100 0 114 10 15 36 36 1.82
112003--112046 16 2.8 16 96 0 79 81 2 13 2 0.88
113283--113311 14 2.1 14 100 0 58 65 6 20 6 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113383--113418 18 2.0 18 100 0 72 33 16 27 22 1.95
114730--114786 30 1.9 30 100 0 114 64 15 7 12 1.47
114858--115029 27 6.4 27 100 0 344 45 11 31 11 1.76
117703--117753 26 2.0 26 88 11 79 43 0 3 52 1.19
128475--128510 18 2.0 18 100 0 72 27 27 5 38 1.79
129147--129188 21 2.0 21 85 0 57 9 45 19 26 1.80
129724--129793 24 2.9 24 95 0 122 37 20 4 38 1.72
130562--130616 21 2.6 21 88 0 74 20 10 9 60 1.57
132724--132780 30 1.9 30 100 0 114 12 7 15 64 1.47
134092--134127 18 2.0 18 100 0 72 22 27 16 33 1.95
134199--134227 14 2.1 14 100 0 58 6 20 6 65 1.40
135464--135507 16 2.8 16 96 0 79 2 13 2 81 0.88
137386--137442 19 3.0 19 100 0 114 36 36 15 10 1.82
150114--150154 15 2.7 15 96 0 73 26 24 0 48 1.51
151557--151625 15 4.6 15 83 0 66 27 36 2 33 1.72
152451--152550 18 5.6 18 91 4 148 22 56 5 17 1.60
152554--152583 15 2.0 15 100 0 60 13 26 0 60 1.34
152886--152942 27 2.1 27 90 0 87 28 17 21 33 1.96
154138--154350 105 2.0 105 100 0 426 26 15 22 35 1.94
154597--154643 21 2.2 21 96 0 85 57 10 21 10 1.62
154597--154665 21 3.1 22 87 6 77 53 11 23 11 1.69
155773--155824 18 2.9 18 100 0 104 21 23 9 46 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
156644--156898 51 5.0 51 96 0 449 43 10 14 31 1.79
156859--157037 39 4.6 39 99 0 349 41 7 18 32 1.79
159937--159985 24 2.0 24 96 0 89 40 16 16 26 1.89
160108--160184 39 2.0 39 89 0 118 45 14 18 22 1.85
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Tables: 1
The End!