NC_039760.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039760.1 Cnidium officinale voucher KIOM201501014665 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148518
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
293--317 12 2.1 12 100 0 50 0 28 16 56 1.41
461--496 18 2.0 18 94 0 63 13 8 22 55 1.65
10716--10757 18 2.3 18 91 0 66 45 7 9 38 1.64
21615--21711 49 2.0 49 89 0 149 29 17 20 31 1.96
28643--28671 14 2.1 14 100 0 58 34 0 6 58 1.25
32660--32689 14 2.1 14 100 0 60 36 6 40 16 1.75
38334--38371 19 2.0 19 100 0 76 36 10 21 31 1.87
48330--48377 13 3.8 13 83 10 64 39 8 2 50 1.44
48337--48364 11 2.5 11 100 0 56 39 7 0 53 1.28
48330--48377 24 2.0 24 91 0 78 39 8 2 50 1.44
48951--49018 23 3.0 23 79 8 61 36 4 0 58 1.18
53872--53915 22 2.0 22 100 0 88 40 9 18 31 1.81
56701--56727 8 3.4 8 100 0 54 51 11 0 37 1.37
63919--63945 14 1.9 14 100 0 54 40 14 7 37 1.74
69778--69823 24 1.9 24 90 0 74 52 4 4 39 1.41
69914--69954 21 2.0 21 90 0 64 26 26 12 34 1.92
72131--72176 19 2.4 20 82 10 60 73 0 17 8 1.07
76186--76222 19 1.9 19 88 0 56 56 10 8 24 1.60
83749--83782 14 2.4 14 90 5 50 38 2 2 55 1.30
90353--90420 21 3.2 21 77 8 75 11 22 8 57 1.61
91531--91574 15 2.9 15 93 0 70 27 34 13 25 1.93
92791--92910 18 6.7 18 97 0 222 28 9 28 34 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
108919--108984 32 2.1 32 97 0 123 40 24 9 25 1.84
115563--115592 13 2.3 13 100 0 60 33 0 13 53 1.40
133512--133577 32 2.1 32 97 0 123 25 9 24 40 1.84
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Tables: 1
The End!