NC_039808.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039808.1 Dioscorea futschauensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153946
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9061--9085 13 1.9 13 100 0 50 40 0 24 36 1.55
12240--12271 16 2.0 16 93 0 55 15 12 3 68 1.32
12362--12409 19 2.5 20 79 3 53 35 2 0 62 1.07
28759--28836 41 1.9 41 89 5 122 21 8 3 65 1.37
28844--28877 9 3.9 9 92 3 52 50 0 5 44 1.26
32309--32354 24 1.9 24 86 0 65 43 4 15 36 1.66
36245--36277 16 2.0 17 88 5 50 42 15 6 36 1.71
46257--46289 17 1.9 17 93 0 57 42 15 15 27 1.86
46952--46993 15 2.9 15 79 17 52 47 0 0 52 1.00
49385--49426 21 2.0 21 100 0 84 33 9 9 47 1.68
56662--56720 17 3.5 17 90 0 91 44 18 18 18 1.88
63418--63462 16 2.8 16 87 12 58 71 0 2 26 0.98
63423--63485 12 5.1 13 75 13 53 63 1 1 33 1.13
63423--63491 11 5.8 11 74 15 57 63 1 1 33 1.12
65440--65471 15 2.1 15 100 0 64 46 6 12 34 1.67
66562--66616 27 2.0 27 96 0 101 54 12 0 32 1.38
67673--67710 14 2.7 14 80 15 51 57 15 0 26 1.38
79073--79121 24 2.0 24 92 0 80 26 30 14 28 1.95
80815--80844 15 2.0 15 100 0 60 46 13 20 20 1.83
83659--83689 14 2.1 15 94 5 55 70 0 3 25 1.02
88861--88929 21 3.3 21 97 0 129 13 30 8 47 1.72
100253--100290 18 2.1 18 100 0 76 50 10 5 34 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120861--120896 9 4.1 9 85 7 56 55 13 8 22 1.65
120864--120896 17 1.9 17 100 0 66 54 15 6 24 1.63
121107--121132 13 2.0 13 100 0 52 15 7 23 53 1.67
137636--137673 18 2.1 18 100 0 76 34 5 10 50 1.59
148997--149065 21 3.3 21 97 0 129 47 8 30 13 1.72
148997--149086 21 4.1 21 92 4 126 48 10 27 13 1.74
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!