NC_040851.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_040851.1 Kaempferia galanga chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163811
Tables: 1
This is table 1 of 1 ( 94 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1657--1683 13 2.1 13 100 0 54 33 14 22 29 1.94
4689--4729 20 2.0 20 100 0 82 60 4 24 9 1.47
5831--5864 17 2.0 17 100 0 68 29 11 11 47 1.76
6106--6139 17 2.0 17 88 0 50 23 17 17 41 1.90
6570--6598 14 2.1 14 100 0 58 48 6 0 44 1.29
6559--6606 24 2.0 24 88 8 71 47 6 0 45 1.27
7325--7350 13 2.0 13 100 0 52 15 0 30 53 1.42
7561--7594 17 2.0 17 100 0 68 64 5 5 23 1.38
8369--8393 13 1.9 13 100 0 50 72 12 0 16 1.13
8599--8642 19 2.4 19 96 3 81 25 11 0 63 1.27
8913--9018 17 6.6 16 76 24 91 45 2 0 50 1.22
8924--9032 30 3.8 26 70 23 69 44 2 0 52 1.15
8941--9013 28 2.7 25 81 14 67 45 2 0 52 1.15
8948--9027 5 14.8 5 75 19 72 42 2 0 55 1.13
8924--9020 33 2.9 33 82 11 103 45 3 0 51 1.17
8908--9018 12 9.2 12 71 21 81 45 3 0 50 1.25
8914--9017 27 3.5 29 72 24 92 45 2 0 50 1.23
14874--14916 12 3.5 12 81 12 52 30 0 0 69 0.88
15007--15050 21 2.1 21 87 8 63 52 0 0 47 1.00
15132--15159 13 2.2 13 100 0 56 53 0 0 46 1.00
15191--15251 13 4.8 12 79 18 61 65 0 3 31 1.09
15204--15252 13 3.7 13 84 12 64 63 0 4 32 1.13
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15285--15316 15 2.1 15 94 0 55 56 0 0 43 0.99
15320--15356 18 2.1 18 100 0 74 16 0 16 67 1.23
15462--15528 10 6.6 10 81 10 82 77 2 0 19 0.89
17803--17829 12 2.2 12 100 0 54 18 7 0 74 1.05
17879--17905 14 1.9 14 100 0 54 62 7 7 22 1.46
26482--26529 21 2.3 21 88 0 69 18 18 16 45 1.85
28818--28870 27 1.9 28 96 3 99 37 7 3 50 1.49
30639--30676 20 1.9 20 94 0 67 63 5 10 21 1.46
33082--33113 15 2.1 15 94 0 55 25 6 9 59 1.52
33130--33161 16 2.0 16 100 0 64 12 12 25 50 1.75
33198--33262 29 2.2 29 88 0 94 44 16 18 20 1.87
33750--33788 19 2.1 19 100 0 78 30 0 25 43 1.55
34075--34114 20 2.0 20 100 0 80 30 20 0 50 1.49
38407--38452 16 2.9 17 84 9 53 17 8 2 71 1.21
38921--38946 13 2.0 13 100 0 52 38 0 7 53 1.30
39566--39604 20 2.0 20 100 0 78 30 10 15 43 1.80
49344--49374 15 2.1 15 93 0 53 16 6 9 67 1.39
49592--49622 13 2.5 13 94 5 55 48 29 0 22 1.51
49697--49738 19 2.2 19 100 0 84 40 9 0 50 1.35
49979--50039 2 32.0 2 77 9 56 60 0 0 39 0.97
49982--50048 19 3.4 19 91 6 98 62 0 1 35 1.04
49982--50041 6 10.2 6 80 10 70 63 0 0 36 0.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49982--50070 45 2.1 41 83 12 108 62 0 1 35 1.02
49994--50068 28 3.0 28 83 14 85 64 0 1 34 1.02
50020--50077 26 2.1 28 81 6 66 68 0 1 29 0.99
54406--54430 12 2.1 12 100 0 50 32 36 0 32 1.58
61258--61287 14 2.1 14 100 0 60 50 0 6 43 1.28
63443--63474 16 2.0 17 88 11 50 46 3 0 50 1.17
63513--63558 23 2.1 23 84 11 62 47 6 0 45 1.28
67426--67484 29 2.0 29 93 0 100 45 3 16 33 1.64
67753--67794 21 2.0 21 81 9 50 21 9 16 52 1.72
69284--69348 21 3.3 21 69 20 68 49 1 7 41 1.41
69283--69383 37 2.7 39 83 10 122 47 1 8 41 1.46
69404--69431 13 2.2 13 100 0 56 71 0 21 7 1.09
72244--72308 21 3.1 21 88 0 103 35 24 7 32 1.84
76356--76384 14 2.1 14 100 0 58 34 6 6 51 1.55
76382--76410 14 2.1 14 100 0 58 37 0 20 41 1.53
83762--83810 24 2.0 24 92 0 80 28 32 12 26 1.92
84981--85031 22 2.2 23 86 6 68 9 3 7 78 1.07
86963--86989 12 2.2 12 100 0 54 33 7 0 59 1.25
88509--88542 8 4.1 8 88 3 50 55 0 8 35 1.31
91120--91215 50 1.9 50 97 0 183 42 17 9 30 1.81
93768--93853 24 3.7 24 93 4 142 13 25 11 48 1.77
95097--95139 21 2.0 21 90 0 68 32 9 25 32 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96291--96338 24 2.0 24 87 0 69 31 10 25 33 1.89
104832--104879 23 2.1 23 96 0 87 41 8 4 45 1.53
116030--116071 21 2.0 21 90 0 66 52 7 26 14 1.67
118183--118230 18 2.6 18 83 9 62 60 2 4 33 1.27
118194--118230 18 2.1 18 100 0 74 56 0 5 37 1.22
120838--120923 11 7.5 11 72 12 57 45 3 2 48 1.32
120837--120923 15 6.1 15 71 24 55 45 3 2 48 1.32
120877--120930 15 3.3 17 78 19 53 46 1 0 51 1.11
120903--120933 6 5.3 6 92 7 55 48 0 0 51 1.00
121683--121716 17 2.0 17 100 0 68 47 0 11 41 1.40
121687--121728 17 2.5 17 84 3 50 59 0 7 33 1.25
125792--125835 20 2.1 22 83 8 56 45 0 4 50 1.22
125917--125959 16 2.6 16 92 3 68 30 4 6 58 1.45
125937--125986 25 2.0 25 84 0 64 36 8 4 52 1.50
126030--126143 11 9.7 11 79 16 79 35 0 0 64 0.93
126045--126136 14 6.9 14 80 14 81 40 0 0 59 0.97
126050--126130 37 2.2 38 95 4 155 40 0 0 59 0.98
126026--126141 51 2.3 49 84 9 155 35 0 0 64 0.94
126024--126142 16 7.8 14 73 22 82 35 0 0 64 0.94
126059--126161 37 3.0 33 85 8 109 36 1 0 60 1.15
126700--126744 18 2.5 18 96 0 81 26 8 0 64 1.23
133240--133276 18 2.1 18 100 0 74 32 16 18 32 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136146--136187 21 2.0 21 90 0 66 14 26 7 52 1.67
147338--147385 23 2.1 23 96 0 87 45 4 8 41 1.53
155879--155947 24 2.9 24 76 8 70 34 26 7 31 1.84
157078--157120 21 2.0 21 90 0 68 32 25 9 32 1.88
158364--158449 24 3.7 24 93 4 142 48 11 25 13 1.77
161002--161097 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!