NC_040959.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_040959.1 Lonicera macranthoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154897
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29282--29311 15 2.0 15 93 0 51 23 26 3 46 1.68
30901--30928 13 2.2 13 100 0 56 60 0 7 32 1.24
33023--33080 14 4.1 14 79 20 68 63 1 6 27 1.29
33023--33074 21 2.5 21 81 12 79 63 1 7 26 1.32
48251--48290 13 2.9 14 88 7 64 32 17 7 42 1.77
59032--59469 141 3.0 141 91 5 664 30 18 20 30 1.96
59836--59980 45 3.2 45 96 0 272 29 22 26 21 1.99
60275--60335 18 3.4 18 93 0 104 39 0 49 11 1.39
60673--60847 66 2.6 66 89 5 244 21 21 35 22 1.96
60673--60826 33 4.5 33 95 3 263 21 20 37 20 1.95
62562--62604 21 2.0 21 90 0 68 30 6 16 46 1.73
63538--63567 14 2.1 14 100 0 60 66 13 6 13 1.43
70235--70283 24 2.1 24 96 3 91 71 0 12 16 1.14
70938--70991 20 2.9 20 71 18 62 46 9 12 31 1.74
70941--70998 18 3.2 18 70 18 57 41 10 12 36 1.76
71562--71665 21 5.0 21 97 0 181 28 32 16 22 1.95
79595--79631 18 2.1 18 94 0 65 59 18 5 16 1.55
83781--83814 17 2.0 17 94 0 59 11 20 5 61 1.50
83790--83823 17 2.0 17 88 0 50 14 17 5 61 1.52
84340--84378 18 2.2 18 86 4 53 41 7 10 41 1.68
85807--85858 24 2.2 24 85 0 68 23 15 7 53 1.67
86654--86686 16 2.2 15 89 10 50 36 6 0 57 1.23
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91190--91292 24 4.4 24 89 3 131 13 24 13 48 1.78
92828--92876 24 2.0 24 84 0 62 32 22 14 30 1.93
93143--93172 15 2.0 15 100 0 60 60 0 26 13 1.34
93174--93240 18 3.7 18 84 7 100 14 4 58 22 1.55
93174--93255 36 2.3 36 97 0 155 15 4 58 20 1.56
93174--93251 18 4.3 18 82 9 97 16 5 57 20 1.58
94014--94081 15 4.5 15 81 7 75 35 4 29 30 1.77
94010--94094 30 2.8 30 80 7 100 34 4 29 31 1.78
95391--95519 12 10.0 12 69 17 55 36 6 33 23 1.82
95415--95462 24 2.0 24 84 8 62 35 2 39 22 1.66
95491--95549 12 4.9 12 80 0 64 49 0 38 11 1.40
95398--95563 78 2.1 78 83 2 199 39 6 33 19 1.78
99804--99845 21 2.0 21 95 0 75 19 19 21 40 1.92
103182--103225 22 2.0 22 100 0 88 27 9 40 22 1.84
111569--111611 22 2.0 22 95 4 79 55 9 4 30 1.52
111627--111662 18 2.0 18 94 0 63 63 5 5 25 1.38
111621--111666 23 2.0 24 82 4 58 63 6 6 23 1.43
111688--111723 10 3.3 11 85 14 56 47 0 0 52 1.00
111688--111722 7 4.9 7 86 6 52 45 0 0 54 0.99
111688--111720 12 2.9 12 86 13 52 45 0 0 54 0.99
115286--115327 20 2.0 20 86 13 59 33 14 2 50 1.56
127781--127827 24 2.0 24 95 0 85 12 17 12 57 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128167--128204 12 3.2 12 100 0 76 7 39 0 52 1.31
129326--129386 30 2.0 30 90 6 97 31 18 14 36 1.91
131868--131902 7 4.9 7 86 6 52 54 0 0 45 0.99
131867--131902 10 3.3 11 85 14 56 52 0 0 47 1.00
131928--131963 18 2.0 18 94 0 63 25 5 5 63 1.38
131979--132021 22 2.0 22 95 4 79 30 4 9 55 1.52
140365--140408 22 2.0 22 100 0 88 22 40 9 27 1.84
143745--143786 21 2.0 21 95 0 75 40 21 19 19 1.92
148041--148099 12 4.9 12 80 0 64 11 38 0 49 1.40
148041--148099 24 2.5 24 86 5 84 11 38 0 49 1.40
148042--148198 24 6.2 24 71 14 66 20 34 5 39 1.76
148139--148175 12 3.1 12 96 0 65 21 43 0 35 1.53
149509--149576 15 4.5 15 86 0 82 30 29 4 35 1.77
149496--149580 30 2.8 30 80 7 100 31 29 4 34 1.78
150350--150416 18 3.7 18 84 7 100 22 58 4 14 1.55
150335--150416 36 2.3 36 97 0 155 20 58 4 15 1.56
150418--150447 15 2.0 15 100 0 60 13 26 0 60 1.34
150714--150762 24 2.0 24 84 0 62 30 14 22 32 1.93
152270--152400 24 5.7 24 82 7 139 50 12 24 12 1.75
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Tables: 1
The End!