NC_040964.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_040964.1 Aralia cordata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156087
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4501--4534 16 2.1 16 100 0 68 47 17 11 23 1.81
8900--8937 19 2.0 19 85 10 51 39 0 26 34 1.57
9573--9602 14 2.1 14 100 0 60 80 0 13 6 0.91
17511--17568 28 2.1 28 100 0 116 27 18 3 50 1.63
29680--29735 2 27.0 2 75 13 51 41 7 0 51 1.29
29680--29735 9 6.8 8 76 13 51 41 7 0 51 1.29
29680--29736 13 4.5 13 84 8 73 40 8 0 50 1.33
29759--29827 23 3.0 23 100 0 138 34 13 13 39 1.83
32849--32881 17 1.9 17 93 0 57 27 6 3 63 1.32
34230--34285 26 2.2 26 100 0 112 19 7 7 66 1.40
48893--48925 13 2.5 13 95 5 57 54 3 6 36 1.41
50585--50618 16 2.1 16 94 0 59 41 20 5 32 1.76
58833--58860 13 2.2 13 100 0 56 28 7 7 57 1.52
59201--59242 21 2.0 21 95 0 75 33 0 11 54 1.37
69212--69244 17 1.9 17 88 11 50 0 33 0 66 0.92
69953--69993 21 2.0 21 95 0 73 29 26 9 34 1.88
76161--76198 19 2.0 19 100 0 76 52 15 10 21 1.72
91606--91650 15 3.0 15 100 0 90 53 6 26 13 1.64
92800--92895 18 5.3 18 100 0 192 28 11 27 33 1.91
115673--115704 16 2.0 16 100 0 64 43 6 18 31 1.75
128179--128232 24 2.3 24 81 12 67 18 3 14 62 1.46
149294--149389 18 5.3 18 100 0 192 33 27 11 28 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150539--150583 15 3.0 15 100 0 90 13 26 6 53 1.64
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Tables: 1
The End!