NC_041087.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041087.1 Apium graveolens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152050
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6292--6319 14 2.0 14 100 0 56 35 21 0 42 1.53
6642--6681 19 2.1 19 100 0 80 37 15 5 42 1.68
14032--14077 20 2.3 20 92 3 76 41 6 19 32 1.77
15575--15617 20 2.2 20 82 0 50 44 11 18 25 1.84
20779--20875 49 2.0 49 89 0 149 29 17 20 31 1.96
28342--28373 16 2.0 16 100 0 64 56 6 0 37 1.25
28342--28374 11 3.0 11 91 8 50 54 9 0 36 1.32
32057--32088 16 2.0 16 100 0 64 31 12 31 25 1.92
46541--46580 11 3.6 11 100 0 80 35 10 0 55 1.34
51013--51085 35 2.1 35 89 0 110 30 12 6 50 1.66
51441--51468 14 2.0 14 100 0 56 28 21 0 50 1.49
52721--52750 14 2.1 14 93 0 51 16 13 16 53 1.73
59733--59764 15 2.1 15 100 0 64 40 12 12 34 1.81
61891--61917 14 1.9 14 100 0 54 40 14 7 37 1.74
65274--65313 20 2.0 20 100 0 80 45 10 10 35 1.71
69985--70030 19 2.4 20 82 10 60 73 0 17 8 1.07
74005--74041 19 1.9 19 100 0 74 54 16 8 21 1.68
81532--81566 14 2.4 14 95 4 61 31 5 0 62 1.18
81540--81574 14 2.4 14 90 4 52 31 8 0 60 1.27
88159--88226 21 3.2 21 77 8 75 11 22 8 57 1.61
89334--89392 15 3.9 15 95 0 100 27 33 13 25 1.93
90609--90692 18 4.7 18 98 0 159 28 5 32 33 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106655--106720 32 2.1 32 94 0 114 40 24 10 24 1.86
130760--130825 32 2.1 32 94 0 114 24 10 24 40 1.86
146788--146871 18 4.7 18 98 0 159 33 32 5 28 1.81
148088--148146 15 3.9 15 95 0 100 25 13 33 27 1.93
149272--149325 21 2.6 21 82 11 74 59 11 20 9 1.59
149255--149324 21 3.4 19 72 16 59 57 8 22 11 1.61
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!