NC_041110.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041110.1 Lycium barbarum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155656
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5038--5063 13 2.0 13 100 0 52 23 15 0 61 1.33
14256--14283 14 2.0 14 100 0 56 50 0 21 28 1.49
14328--14368 17 2.4 17 95 0 73 63 0 2 34 1.08
16672--16704 17 2.0 17 94 5 59 18 15 0 66 1.25
32180--32218 19 2.2 17 86 9 51 74 2 5 17 1.12
32919--32944 13 2.0 13 100 0 52 38 15 0 46 1.46
33378--33421 23 2.0 22 90 4 70 36 9 2 52 1.46
33384--33432 13 4.0 13 76 15 59 36 8 2 53 1.43
52649--52673 11 2.3 11 100 0 50 24 0 0 76 0.80
69156--69205 25 2.0 25 84 7 66 56 8 2 34 1.40
69235--69272 19 2.0 19 100 0 76 26 15 26 31 1.96
70424--70464 21 2.0 21 90 0 64 29 24 9 36 1.87
74162--74190 14 2.1 14 100 0 58 37 6 6 48 1.57
84610--84659 25 2.0 25 100 0 100 32 4 16 48 1.64
88760--88797 20 1.9 20 94 0 67 44 5 23 26 1.74
91370--91483 21 5.1 21 87 5 129 13 24 9 52 1.70
93847--93904 18 3.2 18 87 0 89 32 8 24 34 1.86
96493--96550 29 2.0 29 100 0 116 37 6 24 31 1.82
101729--101790 22 2.7 24 80 12 76 35 3 9 51 1.51
109368--109433 32 2.1 32 94 0 114 42 22 9 25 1.83
113679--113717 20 2.0 20 85 10 53 56 23 0 20 1.42
126694--126733 21 2.0 20 85 5 53 17 5 20 57 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
132778--132843 32 2.1 32 94 0 114 25 9 22 42 1.83
140421--140482 22 2.7 24 80 12 76 51 9 3 35 1.51
145661--145718 29 2.0 29 100 0 116 31 24 6 37 1.82
148307--148364 18 3.2 18 87 0 89 34 24 8 32 1.86
150728--150841 21 5.1 21 86 7 129 52 9 24 13 1.70
150728--150841 24 5.0 24 87 3 96 52 9 24 13 1.70
153414--153451 20 1.9 20 94 0 67 26 23 5 44 1.74
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Tables: 1
The End!