NC_041149.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_041149.1 Neolamarckia cadamba chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154999

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  296--335                           20       2.0      20          100       0         80      45   5    15   35   1.68

  4265--4298                         16       2.1      17          94        5         61      47   0    2    50   1.16

  5605--5634                         15       2.0      15          100       0         60      26   6    13   53   1.64

  6658--6693                         18       2.0      18          100       0         72      61   11   5    22   1.50

  9277--9406                         45       3.0      45          91        7         202     56   1    3    37   1.27

  10350--10375                       13       2.0      13          100       0         52      38   7    0    53   1.30

  16072--16099                       14       2.0      14          100       0         56      35   7    14   42   1.73

  33051--33085                       18       1.9      18          94        0         61      28   14   14   42   1.84

  59577--59669                       18       5.2      18          96        0         159     45   8    22   23   1.80

  61004--61034                       15       2.1      15          93        0         53      29   16   0    54   1.42

  69781--69821                       21       2.0      21          100       0         82      29   24   9    36   1.87

  73325--73349                       13       1.9      13          100       0         50      12   8    0    80   0.92

  78781--78814                       17       2.0      17          100       0         68      23   5    23   47   1.73

  90661--90715                       24       2.5      22          85        8         67      14   23   12   49   1.78

  90661--90743                       21       3.8      22          77        9         80      13   24   10   51   1.72

  93105--93144                       18       2.2      18          95        0         71      32   7    25   35   1.84

  111518--111564                     16       2.9      16          87        9         60      72   4    4    19   1.18

  128089--128145                     15       4.0      15          72        19        50      0    24   5    70   1.08

  147736--147775                     18       2.2      18          95        0         71      35   25   7    32   1.84

  150148--150201                     21       2.6      21          82        11        74      59   11   20   9    1.59

  150137--150219                     21       3.8      22          76        9         71      51   10   24   13   1.72
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!