NC_041296.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041296.1 Gisekia pharnacioides voucher 14CS8741 (KUN) plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154596
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
293--333 15 2.6 17 81 14 52 26 9 0 63 1.25
4654--4683 14 2.1 14 100 0 60 60 13 0 26 1.34
6718--6759 22 1.9 22 85 9 59 30 9 7 52 1.61
7682--7731 18 2.8 16 82 17 55 26 4 0 70 1.05
7680--7735 20 2.8 21 81 7 64 26 3 0 69 1.04
7681--7735 28 2.0 26 86 10 74 27 3 0 69 1.05
13414--13458 22 2.0 22 95 0 81 48 4 46 0 1.22
27912--27947 17 2.1 17 94 0 63 58 5 25 11 1.54
36114--36163 16 3.1 16 85 5 66 58 0 2 40 1.10
42938--42975 20 1.9 20 100 0 76 73 0 10 15 1.09
47648--47713 25 2.5 26 78 11 73 57 1 4 36 1.28
47643--47705 25 2.3 27 81 10 76 58 1 4 34 1.29
47695--47733 20 1.9 21 89 5 62 46 2 0 51 1.14
48528--48576 24 2.0 24 100 0 98 24 0 4 71 1.03
60676--60703 14 2.0 14 100 0 56 50 0 14 35 1.43
61295--61346 26 2.0 26 88 0 77 38 9 23 28 1.86
63151--63180 16 1.9 15 93 6 51 60 3 16 20 1.50
66627--66676 23 2.2 23 88 0 73 58 0 0 42 0.98
75784--75813 14 2.1 14 93 0 51 70 6 6 16 1.31
83500--83541 22 1.9 22 95 0 75 16 26 4 52 1.63
89766--89854 21 4.1 21 81 5 90 12 23 10 53 1.68
92157--92231 9 8.3 9 74 0 69 30 9 22 37 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92157--92231 18 4.2 18 87 0 105 30 9 22 37 1.86
92157--92231 36 2.1 36 94 0 132 30 9 22 37 1.86
99964--100001 18 2.1 18 95 0 67 26 5 7 60 1.46
108161--108221 32 1.9 32 93 0 104 40 19 9 29 1.84
114001--114026 13 2.0 13 100 0 52 53 7 7 30 1.57
121476--121507 16 2.0 17 88 11 50 25 12 6 56 1.59
124176--124220 16 2.9 16 81 15 58 22 20 6 51 1.70
132072--132132 32 1.9 32 93 0 104 29 9 19 40 1.84
140292--140329 18 2.1 18 95 0 67 60 7 5 26 1.46
148062--148136 18 4.2 18 87 0 105 37 22 9 30 1.86
148075--148136 9 6.9 9 77 0 70 38 22 8 30 1.83
148062--148136 36 2.1 36 94 0 132 37 22 9 30 1.86
150439--150527 21 4.1 21 81 5 90 53 10 23 12 1.68
154545--154582 19 2.0 19 100 0 76 36 26 0 36 1.57
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Tables: 1
The End!