NC_041432.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041432.1 Moringa oleifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160600
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4--36 16 2.1 16 100 0 66 30 0 21 48 1.50
2785--2814 15 2.0 15 100 0 60 26 0 20 53 1.46
4768--4813 11 3.8 12 83 13 51 71 0 13 15 1.14
8233--8285 26 2.0 26 100 0 106 50 7 3 37 1.49
8573--8615 16 2.9 15 83 10 52 13 9 0 76 1.01
8582--8615 16 2.1 16 94 0 59 14 8 0 76 1.01
8655--8696 20 2.1 20 100 0 84 35 4 0 59 1.19
8689--8734 7 6.9 7 79 16 53 28 0 0 71 0.86
8667--8734 20 3.4 20 83 6 75 29 1 0 69 0.98
8687--8762 20 3.7 20 82 10 82 32 0 0 67 0.91
8706--8774 23 3.2 22 86 9 90 37 0 0 62 0.96
8753--8784 15 2.1 15 94 0 55 43 0 3 53 1.16
8813--8855 21 2.0 21 95 0 77 62 2 0 34 1.08
10069--10098 14 2.2 14 94 5 53 76 6 10 6 1.15
10240--10284 15 3.0 15 100 0 90 26 6 6 60 1.47
10297--10345 22 2.3 22 96 3 91 42 8 4 44 1.53
13357--13399 10 4.3 10 81 0 50 25 0 0 74 0.82
13359--13414 18 3.1 18 84 5 69 28 0 0 71 0.86
13372--13425 18 2.9 18 83 8 65 31 0 0 68 0.90
13450--13474 13 1.9 13 100 0 50 24 24 4 48 1.68
29748--29793 22 2.1 22 95 0 83 41 10 26 21 1.86
32826--32859 7 4.7 7 92 3 50 44 0 0 55 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34375--34412 18 2.1 19 95 5 69 68 0 10 21 1.19
38543--38610 10 6.7 10 71 20 52 52 2 1 42 1.25
38524--38577 23 2.3 23 96 3 99 57 0 3 38 1.17
38566--38617 8 6.1 8 78 12 50 50 5 0 44 1.26
38651--38692 21 2.0 21 100 0 84 23 0 38 38 1.55
44525--44554 15 2.0 15 100 0 60 33 13 13 40 1.83
47322--47366 22 2.0 22 86 0 63 28 11 26 33 1.91
47431--47464 17 2.0 17 88 11 52 47 5 23 23 1.73
52936--52984 24 2.0 24 100 0 98 20 4 12 63 1.45
53784--53822 19 2.1 19 85 0 51 25 7 2 64 1.33
53797--53969 27 6.4 28 72 19 95 32 2 0 65 1.05
53812--54020 22 9.4 21 66 23 83 35 0 0 63 1.01
53797--53943 27 5.3 27 74 21 108 30 2 0 66 1.05
53828--54031 5 42.2 5 68 20 89 36 0 0 62 1.02
53800--53996 105 1.9 105 82 12 253 33 2 0 64 1.05
53928--54034 37 2.9 37 83 8 137 39 0 0 60 0.97
53942--54050 22 5.0 21 85 7 96 39 0 0 60 0.97
54043--54100 14 4.3 14 77 12 59 63 0 0 36 0.94
54703--54742 20 2.0 20 100 0 80 60 0 0 40 0.97
58487--58512 13 2.0 13 100 0 52 38 0 15 46 1.46
60661--60690 14 2.1 14 100 0 60 43 0 6 50 1.28
62838--62888 24 2.2 22 83 13 59 49 5 3 41 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62851--62884 16 2.1 17 88 5 52 52 5 2 38 1.41
62847--62894 24 2.0 24 91 0 78 50 4 6 39 1.47
72082--72121 18 2.1 19 86 9 55 67 10 2 20 1.31
72211--72249 21 1.9 21 89 5 62 33 28 7 30 1.85
76362--76390 12 2.4 12 100 0 58 75 0 6 17 1.01
81421--81451 16 1.9 16 100 0 62 45 6 6 41 1.55
83702--83749 24 2.0 24 87 0 69 27 29 12 31 1.93
84942--84997 11 5.2 11 82 10 53 44 0 1 53 1.11
93417--93499 21 3.8 22 84 7 89 14 22 9 53 1.70
93439--93506 21 3.2 21 87 0 91 13 22 7 57 1.60
95865--95954 18 5.2 18 88 4 123 32 8 24 34 1.86
95877--95953 9 8.6 9 72 0 64 32 10 25 31 1.90
103629--103655 12 2.2 12 100 0 54 7 7 0 85 0.75
103626--103659 17 2.0 17 88 11 52 8 8 0 82 0.85
103614--103658 17 2.5 19 82 13 51 6 13 0 80 0.91
104180--104212 11 3.1 11 91 4 50 33 0 15 51 1.43
112316--112381 32 2.1 32 94 0 114 40 25 7 25 1.82
119190--119220 16 1.9 16 100 0 62 25 12 6 54 1.62
126532--126564 11 3.0 11 91 8 50 72 0 3 24 0.98
129555--129580 13 2.0 13 100 0 52 38 7 23 30 1.83
136797--136862 32 2.1 32 94 0 114 25 7 25 40 1.82
144966--144998 11 3.1 11 91 4 50 51 15 0 33 1.43
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145519--145552 17 2.0 17 88 11 52 82 0 8 8 0.85
145523--145549 12 2.2 12 100 0 54 85 0 7 7 0.75
153224--153313 18 5.2 18 88 4 123 34 24 8 32 1.86
153224--153301 9 8.7 9 71 0 66 32 25 10 32 1.89
155673--155761 21 4.1 21 84 5 90 55 8 22 13 1.66
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Tables: 1
The End!