NC_041460.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_041460.1 Crocus sativus chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  150820

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3479--3512                         12       2.8      12          100       0         68      41   5    8    44   1.60

  7216--7249                         16       2.1      16          89        10        52      11   5    5    76   1.14

  7456--7494                         8        5.0      8           84        3         53      58   2    2    35   1.25

  26553--26579                       14       1.9      14          100       0         54      29   14   0    55   1.40

  34487--34516                       15       2.0      15          100       0         60      33   13   6    46   1.69

  55159--55195                       6        6.2      6           100       0         74      67   0    16   16   1.23

  56575--56619                       14       3.2      14          84        9         56      35   0    2    62   1.08

  56813--56852                       16       2.6      15          84        7         53      47   12   0    40   1.41

  56820--56852                       16       2.1      16          94        0         57      48   15   0    36   1.45

  62717--62746                       15       2.0      15          100       0         60      66   13   0    20   1.24

  83944--83995                       23       2.3      23          96        3         97      46   7    21   25   1.77

  84312--84343                       15       2.1      15          100       0         64      18   31   0    50   1.48

  105295--105330                     18       2.0      18          100       0         72      50   5    27   16   1.68

  110727--110760                     12       2.8      12          95        0         59      23   8    0    67   1.18

  120267--120330                     13       4.7      13          78        14        67      20   7    0    71   1.10

  124222--124286                     3        21.7     3           83        0         85      0    40   0    60   0.97

  124222--124286                     12       5.4      12          100       0         130     0    40   0    60   0.97

  126801--126836                     18       2.0      18          100       0         72      16   27   5    50   1.68

  147788--147819                     15       2.1      15          100       0         64      50   0    31   18   1.48

  148136--148187                     23       2.3      23          96        3         97      25   21   7    46   1.77
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!