NC_041526.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041526.1 Anemone raddeana voucher ZW12-012 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160493
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2909--2946 10 3.8 10 86 10 51 68 0 2 28 1.03
9451--9505 27 2.0 27 100 0 110 38 0 7 54 1.28
18051--18125 16 5.0 15 92 6 109 65 6 0 28 1.18
18045--18075 13 2.4 13 100 0 62 54 6 0 38 1.26
18051--18127 7 10.4 7 72 15 57 64 6 0 28 1.18
18064--18125 16 3.9 16 95 4 117 67 6 0 25 1.14
18650--18707 19 3.1 19 100 0 116 20 15 25 37 1.92
27945--27969 12 2.1 12 100 0 50 24 8 8 60 1.52
45890--45961 18 4.1 18 73 16 62 44 0 0 55 0.99
46854--46909 21 2.6 22 88 11 89 55 0 8 35 1.31
57433--57463 16 2.0 16 93 6 55 61 6 6 25 1.45
57726--57752 13 2.1 13 100 0 54 59 0 14 25 1.36
59707--59746 20 2.0 20 100 0 80 40 10 15 35 1.80
65892--65921 12 2.5 12 88 0 51 46 0 3 50 1.18
89393--89461 21 3.2 22 80 12 81 11 24 8 55 1.64
91844--91922 18 4.6 18 93 4 128 32 6 25 35 1.81
91856--91914 9 6.6 9 78 0 64 33 6 27 32 1.83
99680--99728 3 16.7 3 87 12 75 34 2 0 63 1.06
99678--99726 24 2.0 24 100 0 98 32 4 0 63 1.13
113809--113847 15 2.6 15 83 0 51 20 2 0 76 0.90
113848--113904 30 1.9 30 100 0 114 56 3 14 26 1.54
113848--113893 15 3.0 16 70 23 53 56 2 13 28 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115364--115396 13 2.5 13 95 0 57 45 0 24 30 1.53
120347--120407 22 2.6 24 80 12 74 62 0 0 37 0.96
120342--120407 31 2.0 33 85 8 91 60 0 0 39 0.97
120484--120513 15 2.0 15 100 0 60 46 6 6 40 1.56
124603--124651 24 2.0 24 100 0 98 48 4 0 46 1.20
124606--124658 24 2.2 24 93 0 88 52 1 0 45 1.11
127438--127474 18 2.1 18 100 0 74 35 5 5 54 1.47
128103--128140 18 2.1 18 100 0 76 21 26 5 47 1.71
128989--129031 21 2.0 21 100 0 86 16 9 4 69 1.31
140917--140965 3 16.7 3 87 12 75 63 0 2 34 1.06
140919--140967 24 2.0 24 100 0 98 63 0 4 32 1.13
148730--148789 9 6.7 9 76 0 66 33 26 6 33 1.83
148723--148801 18 4.6 18 93 4 128 35 25 6 32 1.81
151184--151252 21 3.2 21 72 20 70 55 8 24 11 1.64
151185--151232 21 2.3 21 89 3 71 54 10 25 10 1.66
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Tables: 1
The End!