NC_041648.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041648.1 Aralia continentalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155999
Tables: 1
This is table 1 of 1 ( 21 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4501--4534 16 2.1 16 100 0 68 47 17 11 23 1.81
8902--8939 19 2.0 19 85 10 51 39 0 26 34 1.57
9576--9605 14 2.1 14 100 0 60 80 0 13 6 0.91
15094--15124 15 2.1 15 100 0 62 38 6 6 48 1.55
17535--17592 28 2.1 28 100 0 116 27 18 3 50 1.63
29693--29748 2 27.0 2 79 13 60 42 5 0 51 1.24
29693--29749 13 4.5 13 89 8 82 42 7 0 50 1.29
29772--29817 23 2.0 23 100 0 92 34 13 13 39 1.83
32839--32871 17 1.9 17 93 0 57 27 6 3 63 1.32
48854--48886 13 2.5 13 95 5 57 54 3 6 36 1.41
50546--50579 16 2.1 16 94 0 59 41 20 5 32 1.76
59149--59190 21 2.0 21 100 0 84 33 0 14 52 1.42
69159--69191 17 1.9 17 88 11 50 0 33 0 66 0.92
69899--69939 21 2.0 21 95 0 73 29 26 9 34 1.88
76106--76143 19 2.0 19 100 0 76 52 15 10 21 1.72
91554--91598 15 3.0 15 100 0 90 53 6 26 13 1.64
92748--92825 18 4.3 18 100 0 156 28 11 26 33 1.91
113887--113940 24 2.3 24 81 12 67 62 14 3 18 1.46
126444--126475 16 2.0 16 100 0 64 31 18 6 43 1.75
149224--149301 18 4.3 18 100 0 156 33 26 11 28 1.91
150451--150495 15 3.0 15 100 0 90 13 26 6 53 1.64
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!