NC_042144.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042144.1 Cymbopogon citratus voucher SUPG010 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139708
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5301--5345 22 2.0 22 100 0 90 44 8 17 28 1.79
6007--6053 16 3.0 16 90 3 69 55 12 8 23 1.64
6872--6898 13 2.1 13 100 0 54 51 22 0 25 1.48
6880--6935 28 2.0 28 100 0 112 50 14 10 25 1.75
13786--13810 12 2.1 12 100 0 50 36 16 16 32 1.90
14613--14654 21 2.0 21 100 0 84 61 9 19 9 1.53
15796--15845 25 2.0 25 92 0 82 48 6 4 42 1.46
15796--15843 13 3.8 13 75 5 53 47 6 4 41 1.48
15900--16031 67 2.0 67 89 0 201 31 16 24 28 1.96
16376--16411 18 2.0 18 100 0 72 27 16 16 38 1.90
19768--19802 8 4.2 8 92 7 61 60 0 0 40 0.97
19769--19803 17 2.1 17 100 0 70 57 0 0 42 0.99
19865--19893 15 1.9 15 100 0 58 27 6 20 44 1.77
26126--26166 21 2.0 21 100 0 82 26 29 14 29 1.95
27019--27047 15 1.9 15 100 0 58 27 34 17 20 1.95
28092--28154 21 3.0 21 85 0 81 41 14 31 12 1.83
28212--28302 21 4.3 21 76 5 94 41 14 24 19 1.88
28225--28314 21 4.3 21 75 10 94 40 14 26 18 1.89
28206--28302 42 2.3 42 89 3 142 41 13 26 18 1.88
28396--28481 36 2.5 35 79 11 97 41 10 32 15 1.81
28465--28499 12 2.9 12 100 0 70 42 17 31 8 1.79
30850--30879 11 2.7 11 100 0 60 30 0 16 53 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31051--31098 22 2.1 24 81 11 57 60 2 22 14 1.45
33484--33513 15 2.0 15 100 0 60 26 6 6 60 1.47
34233--34260 14 2.0 14 100 0 56 57 7 7 28 1.52
44665--44717 26 2.0 26 96 0 97 15 35 7 41 1.75
44675--44754 41 2.0 38 86 11 108 15 35 2 47 1.58
44708--44754 8 6.1 8 80 9 62 17 31 0 51 1.46
44708--44754 23 2.0 23 100 0 94 17 31 0 51 1.46
44701--44735 15 2.3 15 100 0 70 11 34 0 54 1.37
47222--47256 17 2.1 17 100 0 70 65 11 17 5 1.43
47656--47721 33 2.0 33 100 0 132 39 3 12 45 1.57
49354--49379 13 2.0 13 100 0 52 30 15 23 30 1.95
51910--51957 24 2.0 24 100 0 96 50 8 8 33 1.63
53164--53213 25 2.0 25 100 0 100 56 20 8 16 1.65
55915--55945 15 2.1 15 100 0 62 19 32 6 41 1.77
58232--58270 19 2.0 20 95 5 71 33 10 0 56 1.33
60614--60655 21 2.0 21 100 0 84 9 33 4 52 1.55
66640--66677 15 2.4 16 91 4 60 21 0 10 68 1.19
66801--66946 21 7.0 21 88 3 195 37 27 4 30 1.77
66805--66946 63 2.3 63 92 0 239 38 27 4 29 1.78
67234--67292 21 2.8 21 75 10 66 49 22 10 18 1.77
69590--69636 17 2.7 17 86 3 58 46 8 8 36 1.65
69607--69640 17 2.0 17 100 0 68 52 5 11 29 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71776--71820 20 2.2 20 88 8 63 55 0 15 28 1.41
77648--77693 18 2.6 18 85 0 56 2 17 8 71 1.21
77666--77706 18 2.3 18 86 0 55 9 14 2 73 1.19
93207--93239 14 2.4 14 94 0 57 27 15 3 54 1.55
93232--93271 20 2.0 20 100 0 80 40 5 5 50 1.46
103524--103567 18 2.4 18 96 0 79 25 27 11 36 1.90
107348--107389 10 4.1 10 87 6 66 23 16 9 50 1.75
107347--107388 21 2.0 21 95 0 75 26 16 9 47 1.77
111572--111636 24 2.7 24 95 2 112 47 12 10 29 1.75
112260--112285 13 2.0 13 100 0 52 53 7 15 23 1.67
117824--117867 18 2.4 18 96 0 79 36 11 27 25 1.90
128120--128159 20 2.0 20 100 0 80 50 5 5 40 1.46
128152--128184 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!