NC_042146.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042146.1 Glycyrrhiza inflata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 127927
Tables: 1
This is table 1 of 1 ( 80 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4794--4838 14 3.2 14 81 9 56 31 0 6 62 1.21
5263--5291 15 1.9 15 100 0 58 34 6 6 51 1.55
5301--5331 15 2.1 15 100 0 62 54 6 0 38 1.26
7496--7542 17 2.8 17 93 6 78 40 4 19 36 1.71
10717--10787 18 4.1 18 67 10 58 42 8 9 39 1.69
10723--10772 24 2.1 24 92 0 82 46 8 8 38 1.63
14997--15027 15 2.1 15 93 0 53 29 6 12 51 1.65
15075--15121 21 2.3 20 82 10 60 70 0 8 21 1.14
15165--15202 14 3.1 12 82 17 51 60 7 0 31 1.25
15165--15296 9 15.2 9 65 21 50 56 3 2 38 1.28
15248--15294 21 2.2 21 78 14 53 59 2 2 36 1.21
15315--15341 13 2.1 13 100 0 54 62 0 0 37 0.95
15370--15439 19 3.5 19 77 18 72 44 0 0 55 0.99
15358--15438 32 2.6 31 70 18 78 48 1 0 50 1.08
15383--15469 44 2.1 40 83 12 104 43 3 0 52 1.18
15459--15549 18 5.1 18 100 0 182 56 5 16 21 1.61
15873--15901 14 2.1 14 100 0 58 65 6 0 27 1.18
19122--19154 17 1.9 17 93 0 57 48 3 12 36 1.56
19626--19680 16 3.2 17 89 7 85 29 7 0 63 1.21
26122--26160 16 2.4 17 86 4 53 15 7 2 74 1.15
30102--30156 19 3.0 19 69 15 53 10 16 3 69 1.32
30814--30876 27 2.5 24 77 20 67 60 0 4 34 1.18
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31277--31321 23 2.0 23 90 0 72 48 4 17 28 1.66
50174--50232 19 3.2 18 86 13 77 54 0 10 35 1.34
50174--50232 9 6.4 10 78 21 67 54 0 10 35 1.34
53219--53264 23 2.0 23 100 0 92 52 4 4 39 1.41
53285--53326 16 2.4 18 80 11 52 71 4 2 21 1.16
53587--53645 9 7.0 9 75 19 56 61 1 1 35 1.16
53588--53645 5 11.6 5 75 14 57 62 1 1 34 1.16
53587--53654 24 2.8 24 80 13 77 63 1 2 32 1.18
54634--54677 18 2.4 18 82 14 54 45 9 15 29 1.77
55079--55119 14 2.9 15 80 20 52 53 0 0 46 1.00
57314--57389 22 3.5 22 92 3 120 40 1 6 51 1.36
57314--57371 11 5.3 11 80 15 75 39 1 6 51 1.39
57320--57385 33 1.9 35 82 11 84 42 1 6 50 1.36
57320--57389 11 6.5 11 76 16 76 41 1 7 50 1.39
57747--57772 13 2.0 13 100 0 52 53 0 15 30 1.42
57924--57948 12 2.1 12 100 0 50 44 8 16 32 1.76
64019--64055 15 2.4 16 90 4 58 54 8 0 37 1.30
64062--64122 30 2.0 30 96 0 113 40 9 1 47 1.46
67613--67653 22 2.0 20 85 9 55 68 7 4 19 1.32
68384--68446 30 2.1 30 100 0 126 58 9 12 19 1.61
68718--68751 9 3.9 9 88 7 52 47 8 0 44 1.34
68783--68859 42 1.9 40 82 12 95 50 6 2 40 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68924--68962 21 1.9 21 89 5 62 30 23 10 35 1.88
69849--69888 20 2.0 20 100 0 80 15 15 15 55 1.71
70768--70804 18 2.1 18 100 0 74 48 5 5 40 1.49
70946--70991 23 2.0 23 100 0 92 39 13 4 43 1.63
76249--76333 44 2.0 44 88 8 133 37 9 14 38 1.78
79467--79492 13 2.0 13 100 0 52 30 23 0 46 1.53
79555--79581 11 2.5 11 100 0 54 55 0 11 33 1.35
80908--80980 16 4.6 16 85 0 101 43 12 8 35 1.72
91119--91162 9 4.9 9 80 0 52 36 4 27 31 1.77
91133--91184 18 2.9 18 94 5 88 38 5 21 34 1.77
92479--92761 27 10.7 27 94 1 425 35 9 24 30 1.87
98441--98520 19 4.3 19 82 7 110 27 7 7 57 1.53
98426--98553 56 2.2 60 82 16 171 29 7 7 55 1.55
98512--98568 14 4.1 14 86 6 80 31 8 7 52 1.59
108150--108242 20 4.4 20 67 18 64 61 5 0 33 1.19
108153--108206 16 3.4 16 72 27 60 61 3 0 35 1.14
108205--108254 26 1.9 26 100 0 100 60 8 0 32 1.26
108219--108310 44 2.1 44 91 2 150 54 9 0 35 1.34
108201--108283 32 2.7 29 77 17 87 59 8 0 32 1.28
108330--108368 19 2.1 19 90 0 60 71 7 17 2 1.21
110554--110621 24 2.8 24 82 8 93 58 0 32 8 1.29
112221--112261 18 2.2 19 86 4 57 73 2 0 24 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112792--112856 21 3.1 21 95 0 112 46 15 10 27 1.79
113788--113878 28 3.4 28 81 12 113 53 1 0 45 1.07
113826--113905 21 3.9 19 76 12 70 63 1 0 35 1.02
113789--113878 2 49.5 2 74 22 83 53 1 0 45 1.07
113823--113910 43 2.1 43 81 8 103 63 1 0 35 1.02
113868--113910 19 2.3 19 80 4 52 69 0 0 30 0.88
113907--113946 11 3.2 12 86 13 55 50 0 0 50 1.00
118824--118876 13 3.8 15 83 16 78 60 0 5 33 1.20
123711--123759 19 2.5 19 78 15 55 59 4 4 32 1.35
124426--124472 9 5.0 9 82 10 58 46 0 2 51 1.13
124431--124484 18 3.0 17 81 10 63 48 1 1 48 1.23
125015--125051 18 2.1 18 100 0 74 54 10 10 24 1.67
125145--125186 21 2.0 21 100 0 84 52 0 0 47 1.00
125140--125186 21 2.3 19 83 16 67 51 0 0 48 1.00
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!