NC_042227.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042227.1 Liriope spicata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157055
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7269--7293 12 2.1 12 100 0 50 44 8 8 40 1.63
9297--9329 15 2.2 15 100 0 66 24 6 0 69 1.10
36077--36106 14 2.1 14 100 0 60 20 6 23 50 1.71
36431--36469 14 2.7 14 92 4 60 33 0 15 51 1.44
45072--45101 15 2.0 15 93 0 51 43 0 36 20 1.52
46651--46685 17 2.1 17 94 0 61 42 8 5 42 1.59
46721--46755 17 2.1 17 100 0 70 54 5 5 34 1.48
46751--46821 25 2.8 25 80 18 85 49 4 1 45 1.30
46752--46821 23 2.9 24 81 14 81 48 4 1 45 1.30
46748--46816 9 6.9 10 70 18 54 49 2 1 46 1.25
46971--47004 10 3.3 10 92 8 59 38 8 0 52 1.33
46975--47021 14 3.5 14 80 16 55 40 8 0 51 1.33
47010--47066 16 3.8 15 75 13 55 52 1 0 45 1.11
47022--47064 20 2.1 21 86 4 61 58 0 0 41 0.98
47028--47066 13 2.8 13 85 11 51 56 0 0 43 0.99
51339--51390 27 1.9 27 88 7 79 55 7 3 32 1.46
51485--51519 13 2.8 13 95 4 63 37 0 0 62 0.95
61606--61635 10 3.1 10 90 9 53 63 6 0 30 1.20
61960--61993 12 2.7 13 90 9 61 29 8 0 61 1.26
67440--67481 19 2.3 19 87 4 59 21 14 19 45 1.85
69392--69432 21 2.0 21 90 4 66 68 4 2 24 1.22
69499--69542 21 2.1 21 86 0 61 34 25 9 31 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
80835--80883 24 2.0 24 92 0 80 28 32 12 26 1.92
83673--83709 19 1.9 19 94 0 65 27 5 2 64 1.28
88031--88082 23 2.3 23 96 3 97 46 7 21 25 1.77
90518--90628 21 5.1 21 92 3 159 13 25 9 51 1.72
92972--93038 24 3.6 18 74 25 59 32 7 22 37 1.82
92979--93031 24 2.2 24 96 0 97 33 9 22 33 1.86
119719--119778 17 3.5 17 77 11 68 28 3 1 66 1.17
119733--119788 29 1.9 29 82 7 69 26 1 7 64 1.29
120982--121013 17 1.9 17 93 6 57 15 12 0 71 1.14
121809--121836 9 3.1 9 100 0 56 32 0 10 57 1.33
127901--127940 15 2.7 15 84 0 53 35 7 2 55 1.42
129436--129537 15 6.8 15 100 0 204 33 6 6 52 1.54
149392--149458 24 3.6 18 74 25 59 37 22 7 32 1.82
149399--149451 24 2.2 24 96 0 97 33 22 9 33 1.86
151802--151892 21 4.3 21 95 0 155 51 8 26 13 1.69
154348--154399 23 2.3 23 96 3 97 25 21 7 46 1.77
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!