NC_042369.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042369.1 Lawsonia inermis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157755
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4544--4589 23 2.0 23 86 0 65 45 26 4 23 1.71
9112--9140 15 1.9 15 100 0 58 44 13 0 41 1.44
9463--9490 14 2.0 14 100 0 56 57 0 7 35 1.26
10928--10967 20 2.0 20 95 0 71 42 5 5 47 1.47
11023--11064 21 2.0 21 81 9 50 59 0 0 40 0.97
14907--14938 15 2.2 14 94 5 55 21 9 6 62 1.47
15469--15515 14 3.2 14 90 6 67 31 0 0 68 0.90
38528--38564 18 2.1 18 89 0 56 43 5 5 45 1.49
49283--49324 12 3.0 15 80 20 63 45 0 14 40 1.45
49285--49330 15 3.3 15 77 22 55 45 0 13 41 1.43
49270--49330 27 2.3 26 86 8 86 47 1 11 39 1.50
49547--49582 18 2.0 18 94 0 63 58 5 5 30 1.44
58707--58732 13 2.0 13 100 0 52 38 0 15 46 1.46
62773--62822 25 2.0 25 100 0 100 40 8 20 32 1.81
62866--62901 15 2.3 16 90 4 56 33 16 2 47 1.61
67218--67249 16 2.0 16 93 0 55 34 12 9 43 1.75
72280--72318 21 1.9 21 94 5 71 30 23 10 35 1.88
75877--75904 14 2.0 14 100 0 56 28 7 7 57 1.52
86847--86877 15 2.1 14 94 5 53 25 6 16 51 1.68
92671--92736 21 3.2 21 82 2 80 12 22 7 57 1.60
95090--95226 18 7.6 18 95 0 238 32 5 28 34 1.79
103485--103522 18 2.1 18 90 0 58 26 7 5 60 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116807--116843 17 2.2 16 90 4 56 10 10 0 78 0.97
128220--128270 18 2.8 18 74 11 50 27 13 3 54 1.56
130520--130581 13 4.7 13 86 9 65 3 17 3 75 1.07
130532--130581 13 4.0 12 87 10 73 2 18 2 78 0.95
130514--130581 25 2.6 25 80 13 75 2 19 2 75 1.07
142657--142694 18 2.1 18 90 0 58 60 5 7 26 1.46
150953--151089 18 7.6 18 95 0 238 34 28 5 32 1.79
153442--153531 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!