NC_042371.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042371.1 Menispermum dauricum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158623
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2259--2284 13 2.0 13 100 0 52 23 7 38 30 1.83
5473--5520 17 2.9 16 87 6 78 60 0 6 33 1.22
6997--7027 15 2.1 15 100 0 62 19 19 12 48 1.81
7653--7809 38 4.1 38 82 15 207 33 17 14 35 1.90
9815--9870 28 2.0 28 100 0 112 32 14 3 50 1.60
10002--10249 124 2.0 124 100 0 496 31 16 13 37 1.88
29854--29891 19 2.0 19 89 0 58 28 13 13 44 1.81
30029--30054 13 2.0 13 100 0 52 61 0 15 23 1.33
31548--31582 17 2.1 17 100 0 70 48 5 0 45 1.26
33566--33597 14 2.2 15 94 5 57 15 12 9 62 1.54
33605--33668 25 2.6 24 81 13 69 31 18 0 50 1.48
33642--33699 18 3.3 18 92 4 100 32 17 0 50 1.46
33700--33724 11 2.3 11 100 0 50 48 8 0 44 1.32
33748--33792 18 2.4 19 81 11 56 44 8 6 40 1.62
33996--34023 14 2.0 14 100 0 56 50 0 14 35 1.43
35453--35500 13 3.5 13 83 10 69 41 8 0 50 1.33
35450--35503 28 1.9 28 100 0 108 42 7 0 50 1.30
35455--35502 15 3.3 15 72 21 57 43 6 0 50 1.27
35524--35575 26 2.0 25 96 3 95 42 3 3 50 1.39
39563--39662 15 6.5 15 71 21 66 45 9 3 43 1.51
39626--39689 2 35.0 2 75 17 50 43 3 3 50 1.33
39626--39663 15 2.5 15 100 0 76 42 5 0 52 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
39694--39740 23 2.1 22 92 4 76 48 14 4 31 1.63
39768--39862 45 2.1 45 94 1 165 45 2 3 49 1.29
48357--48386 15 2.0 15 93 0 51 40 20 10 30 1.85
48750--48784 12 2.8 13 86 8 54 8 11 0 80 0.92
49032--49067 18 2.0 18 100 0 72 55 11 5 27 1.57
50484--50521 19 2.0 19 100 0 76 52 5 5 36 1.47
50621--50682 7 9.4 7 74 13 60 41 3 1 53 1.27
50614--50667 23 2.2 26 87 9 78 42 5 0 51 1.25
50615--50726 26 4.4 25 72 15 81 43 2 0 52 1.21
50615--50707 13 7.5 12 73 19 75 43 3 1 52 1.24
50620--50726 39 2.7 41 82 12 111 44 1 0 52 1.18
50698--50726 13 2.3 13 94 5 51 48 0 0 51 1.00
50695--50755 30 2.1 30 85 8 83 49 0 4 45 1.23
52525--52575 11 4.6 11 75 18 52 54 1 17 25 1.53
59002--59029 14 2.0 14 100 0 56 35 0 14 50 1.43
63523--63581 27 2.2 27 81 6 66 50 3 6 38 1.45
65073--65099 13 2.1 13 100 0 54 40 0 14 44 1.46
65193--65243 17 2.9 18 82 14 70 5 7 1 84 0.85
65197--65292 1 96.0 1 77 0 57 10 4 1 84 0.81
70950--71009 19 3.6 17 81 14 63 63 10 0 26 1.26
71068--71126 9 6.7 9 84 3 75 52 11 0 35 1.38
71068--71126 18 3.3 18 92 2 93 52 11 0 35 1.38
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71153--71192 13 3.1 13 100 0 80 47 0 15 37 1.45
71153--71205 26 2.0 26 85 7 72 52 0 15 32 1.42
72944--72977 17 2.0 17 100 0 68 41 11 17 29 1.85
76518--76546 14 2.1 14 100 0 58 20 6 13 58 1.58
82332--82364 16 2.1 16 100 0 66 30 6 30 33 1.82
82456--82495 15 2.6 16 84 15 57 15 12 0 72 1.12
83982--84030 24 2.0 24 88 0 71 26 32 12 28 1.92
85200--85225 13 2.0 13 100 0 52 53 0 7 38 1.30
86975--87032 15 3.6 16 76 17 57 5 34 0 60 1.19
88062--88094 15 2.3 14 94 5 57 21 51 0 27 1.48
91086--91115 15 2.0 15 93 0 51 43 13 30 13 1.82
91340--91387 24 2.0 24 95 0 87 31 8 27 33 1.86
93387--93443 21 2.7 21 97 0 105 10 24 14 50 1.73
95833--95884 18 3.1 18 86 8 74 30 5 25 38 1.79
97152--97191 15 2.7 15 100 0 80 37 10 35 17 1.83
113239--113279 21 2.0 21 95 0 73 24 14 17 43 1.86
113307--113335 2 14.5 2 100 0 58 48 0 0 51 1.00
113522--113560 19 2.1 19 100 0 78 64 0 10 25 1.25
116572--116612 20 2.0 20 100 0 82 29 9 17 43 1.80
119653--119695 21 2.0 21 100 0 86 53 9 4 32 1.53
132548--132583 18 2.0 18 100 0 72 22 22 22 33 1.97
134168--134196 2 14.5 2 100 0 58 51 0 0 48 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134224--134264 21 2.0 21 95 0 73 43 17 14 24 1.86
150303--150342 15 2.7 15 100 0 80 17 35 10 37 1.83
151610--151661 18 3.1 18 86 8 74 38 25 5 30 1.79
154051--154107 21 2.7 21 97 0 105 50 14 24 10 1.73
156116--156163 24 2.0 24 95 0 87 33 27 8 31 1.86
156388--156417 15 2.0 15 93 0 51 13 30 13 43 1.82
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Tables: 1
The End!