NC_042700.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042700.1 Cullen corylifolium chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153114
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4590--4620 16 1.9 16 93 0 53 41 3 0 54 1.16
5261--5311 2 26.5 2 76 7 52 50 0 0 49 1.00
7235--7280 22 2.1 22 100 0 92 39 8 17 34 1.80
13092--13119 14 2.0 14 100 0 56 28 14 7 50 1.69
14709--14736 14 2.0 14 100 0 56 0 0 28 71 0.86
15002--15038 14 2.6 14 91 8 58 64 2 0 32 1.07
17794--17827 16 2.2 16 89 5 52 64 5 2 26 1.30
18035--18059 12 2.1 12 100 0 50 36 16 16 32 1.90
24413--24447 17 2.1 17 100 0 70 22 5 0 71 1.07
25152--25194 16 2.6 16 88 3 59 41 9 4 44 1.57
30129--30156 13 2.2 13 100 0 56 46 0 0 53 1.00
30792--30829 18 2.1 18 100 0 76 34 21 0 44 1.52
33652--33684 11 3.2 11 91 8 52 45 18 0 36 1.49
47678--47704 14 1.9 14 100 0 54 44 0 25 29 1.54
49232--49277 2 23.0 2 81 0 56 43 6 2 47 1.41
49232--49285 12 4.5 12 83 0 54 44 7 1 46 1.42
49232--49276 18 2.5 18 88 0 72 44 6 2 46 1.42
49232--49277 14 3.3 14 87 0 65 43 6 2 47 1.41
49227--49285 14 4.4 14 78 8 59 45 6 3 44 1.47
52343--52378 14 2.6 14 95 4 65 72 0 8 19 1.10
58106--58139 12 2.8 12 95 0 59 32 5 17 44 1.73
65913--65950 17 2.2 17 95 0 67 47 7 13 31 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66281--66330 24 2.0 25 96 3 93 62 4 12 22 1.46
67316--67352 17 2.2 17 86 13 51 51 8 0 40 1.32
69361--69392 16 2.0 16 93 0 55 31 12 3 53 1.54
80419--80458 21 1.9 21 85 10 55 17 5 0 77 0.94
80460--80492 17 1.9 17 93 0 57 39 6 0 54 1.25
81984--82014 16 1.9 16 100 0 62 29 12 6 51 1.65
83714--83760 18 2.7 17 87 12 69 36 2 0 61 1.08
84785--84818 14 2.4 14 100 0 68 50 0 14 35 1.44
89248--89299 21 2.5 21 83 0 77 9 23 9 57 1.60
90536--90598 21 3.0 21 100 0 126 38 4 28 28 1.77
91709--91746 18 2.1 18 95 0 67 34 5 23 36 1.78
91716--91755 9 4.4 9 80 0 53 35 7 27 30 1.84
99329--99353 13 1.9 13 100 0 50 24 8 8 60 1.52
109127--109177 25 2.0 25 92 0 84 56 11 9 21 1.63
110664--110705 21 2.0 22 85 4 59 59 4 2 33 1.31
112072--112119 12 4.0 12 86 0 69 43 14 8 33 1.75
114842--114888 22 2.1 22 96 0 85 44 0 12 42 1.42
117591--117628 19 2.0 19 100 0 76 57 5 5 31 1.43
120353--120400 25 2.0 24 84 12 62 20 6 12 60 1.54
124579--124618 14 2.9 14 92 0 62 47 0 20 32 1.50
128025--128075 25 2.0 25 92 0 84 21 9 11 56 1.63
137849--137873 13 1.9 13 100 0 50 60 8 8 24 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145447--145486 9 4.4 9 80 0 53 30 27 7 35 1.84
145456--145493 18 2.1 18 95 0 67 36 23 5 34 1.78
146604--146666 21 3.0 21 100 0 126 28 28 4 38 1.77
147903--147954 21 2.5 21 83 0 77 57 9 23 9 1.60
152384--152417 14 2.4 14 100 0 68 35 14 0 50 1.44
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Tables: 1
The End!