NC_042724.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042724.1 Arctium lappa voucher RW741 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152708
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4127--4152 13 2.0 13 100 0 52 53 7 7 30 1.57
7346--7393 24 2.0 24 100 0 96 41 8 8 41 1.65
23725--23786 31 2.0 31 100 0 124 48 6 3 41 1.45
25232--25278 24 2.0 24 83 8 60 46 0 36 17 1.48
34387--34415 14 2.1 14 100 0 58 34 20 13 31 1.92
51654--51683 15 2.0 15 93 0 51 36 16 13 33 1.88
54399--54430 16 2.0 16 100 0 64 43 25 0 31 1.55
58323--58360 19 2.0 19 100 0 76 68 5 15 10 1.36
58526--58558 15 2.2 15 100 0 66 60 0 0 39 0.97
58547--58624 19 4.1 19 100 0 156 48 0 5 46 1.24
58783--58836 20 2.6 21 91 8 92 48 3 5 42 1.44
62767--62809 21 2.0 21 100 0 86 55 4 9 30 1.52
63265--63303 16 2.4 16 91 0 60 35 5 2 56 1.35
63267--63308 16 2.4 17 80 15 50 40 4 2 52 1.35
65377--65401 12 2.1 12 100 0 50 40 8 8 44 1.63
67654--67694 21 2.0 21 95 0 73 31 24 9 34 1.88
91004--91084 18 4.5 18 90 0 108 24 9 27 38 1.87
106884--106945 32 1.9 32 93 0 106 41 22 8 27 1.82
123977--124018 21 2.0 21 95 0 75 50 30 0 19 1.48
126728--126818 45 2.0 45 93 0 155 27 15 10 46 1.79
129528--129589 32 1.9 32 93 0 106 27 8 22 41 1.82
145389--145469 18 4.5 18 90 0 108 38 27 9 24 1.87
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!