NC_042746.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042746.1 Cornus officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158257
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13683--13733 26 2.0 26 84 7 68 13 9 1 74 1.15
16996--17023 14 2.0 14 100 0 56 21 14 0 64 1.29
17110--17143 17 2.0 17 100 0 68 29 11 17 41 1.85
28161--28190 11 2.7 11 94 0 51 26 26 6 40 1.81
32585--32611 14 1.9 14 100 0 54 44 7 7 40 1.60
48936--48999 7 8.7 7 80 16 76 32 10 3 53 1.52
48934--49000 9 7.7 9 68 18 52 34 10 2 52 1.51
48947--49001 16 3.4 16 97 0 101 32 10 5 50 1.60
57408--57449 19 2.3 18 95 4 75 21 7 9 61 1.50
59570--59603 16 2.1 16 94 0 59 52 2 2 41 1.31
60167--60197 15 2.1 15 93 0 53 25 12 16 45 1.83
71027--71067 21 2.0 21 95 0 73 29 26 9 34 1.88
79801--79828 14 2.0 14 100 0 56 28 21 7 42 1.79
80194--80224 16 1.9 16 93 0 53 41 9 3 45 1.53
82417--82465 24 2.0 24 92 7 82 28 24 16 30 1.96
84793--84831 21 1.9 21 85 15 55 46 7 7 38 1.61
92084--92138 24 2.5 22 85 8 67 14 23 12 49 1.78
92106--92173 21 3.2 21 77 8 75 11 22 8 57 1.61
94529--94608 18 4.6 18 87 4 112 32 8 25 33 1.86
94541--94609 9 7.7 9 73 0 66 31 10 26 31 1.89
96935--96990 18 3.1 18 100 0 112 44 5 21 28 1.74
102459--102511 21 2.8 18 81 15 70 26 7 3 62 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102459--102517 18 3.1 18 79 13 64 25 6 3 64 1.34
102491--102554 26 2.3 28 78 13 78 29 3 9 57 1.45
102529--102561 11 3.1 11 91 4 50 33 0 15 51 1.43
102512--102557 15 2.9 15 83 6 56 32 0 13 54 1.39
102464--102545 21 3.8 21 72 15 60 30 3 7 58 1.43
110705--110770 32 2.1 32 97 0 123 40 24 9 25 1.84
115112--115150 20 2.0 20 85 10 53 56 23 0 20 1.42
115793--115834 20 2.1 20 100 0 84 52 9 9 28 1.65
134801--134866 32 2.1 32 97 0 123 25 9 24 40 1.84
143014--143059 15 2.9 15 87 6 56 54 13 0 32 1.39
143010--143042 11 3.1 11 91 4 50 51 15 0 33 1.43
143017--143068 26 2.0 26 88 0 77 57 9 1 30 1.42
143054--143112 18 3.1 18 75 13 55 64 3 6 25 1.34
148581--148636 18 3.1 18 100 0 112 28 21 5 44 1.74
150962--151030 9 7.7 9 73 0 66 31 26 10 31 1.89
150963--151042 18 4.6 18 87 4 112 33 25 8 32 1.86
153398--153487 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!