NC_042747.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042747.1 Pandanus tectorius chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159362
Tables: 1
This is table 1 of 1 ( 85 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
760--796 18 2.1 18 89 0 56 40 16 10 32 1.83
3373--3402 15 2.0 15 100 0 60 26 26 20 26 1.99
5135--5188 25 2.2 25 100 0 108 53 7 7 31 1.56
8001--8104 49 2.1 49 98 1 201 45 9 8 36 1.68
8588--8916 164 2.0 164 100 0 658 39 12 12 35 1.81
10408--10547 70 2.0 70 100 0 280 38 14 17 30 1.89
13570--13695 59 2.1 59 100 0 252 35 7 2 53 1.43
27702--27734 16 2.1 16 94 0 57 72 6 6 15 1.24
27823--27898 35 2.2 35 97 0 143 25 14 22 38 1.92
27966--28039 37 2.0 37 100 0 148 35 18 13 32 1.90
28050--28081 16 2.0 16 100 0 64 31 12 6 50 1.65
28053--28093 16 2.6 16 88 0 55 39 14 2 43 1.59
28247--28277 15 2.1 15 100 0 62 61 0 12 25 1.32
29359--29453 46 2.1 46 100 0 190 35 12 11 40 1.80
29549--29593 20 2.3 20 96 3 83 24 24 11 40 1.87
30717--30804 38 2.3 38 100 0 176 37 21 2 38 1.66
32507--32558 3 17.7 3 96 4 97 69 0 0 30 0.89
37576--37636 19 3.2 19 100 0 122 44 9 4 40 1.59
43184--43222 18 2.2 18 90 0 60 30 0 20 48 1.50
45555--45589 1 35.0 1 88 0 52 94 2 2 0 0.37
46560--46752 99 1.9 99 100 0 386 34 15 18 31 1.92
48418--48442 12 2.1 12 100 0 50 36 16 0 48 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49463--49494 16 2.0 16 100 0 64 43 0 12 43 1.42
50376--50408 11 3.2 11 87 12 52 0 6 6 87 0.65
52914--52953 18 2.4 16 83 8 53 47 7 0 45 1.31
52934--52981 19 2.5 19 77 16 53 50 2 2 45 1.25
53007--53066 14 5.0 11 75 16 50 35 1 3 60 1.23
52989--53067 36 2.1 38 81 9 92 37 3 2 55 1.31
52998--53083 41 2.1 41 82 4 102 38 2 3 55 1.29
53062--53095 9 3.9 9 88 7 52 50 0 5 44 1.26
53062--53095 17 2.0 17 94 0 59 50 0 5 44 1.26
53513--53566 26 2.1 26 100 0 108 22 18 22 37 1.95
54727--54770 20 2.2 20 100 0 88 31 9 20 38 1.84
57467--57581 56 2.1 56 100 0 230 41 6 23 27 1.80
61714--61979 132 2.0 132 100 0 532 39 16 11 33 1.84
63193--63329 68 2.0 68 100 0 274 32 14 17 35 1.90
63196--63304 31 3.3 31 66 18 85 33 12 20 33 1.90
63446--63627 94 1.9 95 98 1 357 42 13 15 29 1.84
66503--66608 52 2.0 52 100 0 212 69 3 1 24 1.15
67013--67041 14 2.1 14 100 0 58 51 6 20 20 1.70
69686--69713 13 2.2 13 100 0 56 32 14 14 39 1.86
70752--70794 20 2.2 20 100 0 86 39 9 9 41 1.69
71185--71250 32 2.1 32 100 0 132 51 9 6 33 1.58
71334--71377 21 2.1 21 91 0 70 31 25 11 31 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74542--74573 16 2.0 16 93 0 55 31 9 18 40 1.83
74599--74680 36 2.3 36 97 0 155 46 9 12 31 1.74
74899--75072 87 2.0 87 100 0 348 33 13 12 40 1.83
78577--78601 12 2.1 12 100 0 50 16 8 16 60 1.58
81935--81964 15 2.0 15 93 0 51 33 13 10 43 1.77
84109--84162 23 2.5 21 80 14 56 5 7 3 83 0.91
84188--84227 20 2.0 20 100 0 80 45 20 10 25 1.81
88775--88867 48 1.9 48 97 0 177 26 26 13 32 1.94
90707--90759 26 2.0 26 100 0 106 41 11 43 3 1.58
92771--92860 21 4.1 21 92 4 135 13 26 10 50 1.73
95228--95302 15 4.8 15 68 20 55 33 8 21 37 1.83
95235--95301 24 2.8 24 97 0 125 34 8 22 34 1.85
97457--97491 15 2.3 15 100 0 70 37 22 22 17 1.94
102631--102660 15 2.0 15 93 0 51 16 0 0 83 0.65
102634--102682 17 2.9 16 79 11 53 10 0 6 83 0.80
103531--103560 14 2.1 14 100 0 60 56 0 13 30 1.37
103834--103875 21 2.0 21 95 0 75 40 14 21 23 1.90
112869--112932 31 2.1 31 100 0 128 23 23 9 43 1.82
116093--116151 26 2.2 26 96 3 109 54 6 22 16 1.66
117183--117235 26 2.0 26 100 0 106 50 26 7 15 1.70
118851--118911 30 2.0 30 100 0 122 29 24 9 36 1.88
121864--121967 51 2.0 51 100 0 208 37 3 13 45 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121881--121988 51 2.1 50 83 6 128 43 3 12 40 1.59
123643--123702 30 2.0 30 96 0 111 48 16 10 25 1.77
124338--124415 37 2.1 37 100 0 156 52 2 12 32 1.53
124855--124960 16 6.6 17 84 10 134 38 0 0 61 0.96
124856--124967 24 4.6 23 83 8 134 39 0 0 60 0.97
124865--124974 16 6.9 15 77 11 85 40 0 0 60 0.97
124854--124967 48 2.4 48 97 2 212 39 0 0 60 0.97
129151--129198 23 2.1 23 100 0 96 25 8 16 50 1.73
130228--130338 53 2.1 53 100 0 222 30 7 9 52 1.62
133878--133941 31 2.1 31 100 0 128 43 9 23 23 1.82
142935--142976 21 2.0 21 95 0 75 23 21 14 40 1.90
143250--143279 14 2.1 14 100 0 60 30 13 0 56 1.37
144115--144179 15 4.3 15 73 15 53 80 4 3 12 0.99
149319--149353 15 2.3 15 100 0 70 17 22 22 37 1.94
151509--151575 24 2.8 24 97 0 125 34 22 8 34 1.85
151508--151582 15 4.8 15 68 20 55 37 21 8 33 1.83
153950--154039 21 4.1 21 92 4 135 50 10 26 13 1.73
156051--156103 26 2.0 26 100 0 106 3 43 11 41 1.58
157943--158035 48 1.9 48 97 0 177 32 13 26 26 1.94
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Tables: 1
The End!