NC_042826.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042826.1 Angelica sinensis isolate MG5 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 142485
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5177--5204 14 2.0 14 100 0 56 35 21 0 42 1.53
26858--26886 14 2.1 14 100 0 58 34 0 6 58 1.25
36481--36524 19 2.2 20 96 4 81 36 9 22 31 1.86
46497--46526 11 2.7 11 94 0 51 43 3 0 53 1.17
46492--46539 13 3.8 13 83 10 64 41 6 2 50 1.39
46492--46539 24 2.0 24 87 0 69 41 6 2 50 1.39
51950--51993 22 2.0 22 100 0 88 40 9 18 31 1.81
61971--61997 14 1.9 14 100 0 54 40 14 7 37 1.74
63535--63588 5 10.6 5 77 18 58 44 0 0 55 0.99
63535--63569 14 2.3 15 90 9 54 45 0 0 54 0.99
63535--63587 16 3.5 15 87 10 72 45 0 0 54 0.99
67812--67857 24 1.9 24 86 0 65 50 4 4 41 1.42
67948--67988 21 2.0 21 90 0 64 26 26 12 34 1.92
68243--68285 21 2.0 21 100 0 86 25 23 9 41 1.84
74243--74279 19 1.9 19 94 0 65 54 13 8 24 1.66
74841--74879 19 2.1 19 100 0 78 64 5 5 25 1.35
81814--81847 14 2.4 14 90 5 50 38 2 2 55 1.30
88435--88502 21 3.2 21 77 8 75 11 22 8 57 1.61
89616--89659 15 2.9 15 93 0 70 27 34 13 25 1.93
90876--90977 18 5.7 18 98 0 195 28 9 27 34 1.89
96327--96358 16 2.0 16 100 0 64 31 37 6 25 1.81
100666--100691 12 2.2 12 100 0 52 46 7 7 38 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100839--100864 12 2.2 12 100 0 52 7 30 0 61 1.24
104154--104194 20 2.0 20 100 0 82 51 14 29 4 1.63
108819--108884 32 2.1 32 97 0 123 40 24 9 25 1.84
112359--112402 17 2.6 17 85 0 61 63 4 4 27 1.33
133384--133449 32 2.1 32 97 0 123 25 9 24 40 1.84
138074--138114 20 2.0 20 100 0 82 4 29 14 51 1.63
141404--141429 12 2.2 12 100 0 52 61 0 30 7 1.24
141577--141602 12 2.2 12 100 0 52 38 7 7 46 1.61
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Tables: 1
The End!