NC_042886.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042886.1 Curcuma longa voucher wen13706 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159550
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6019--6052 17 2.0 17 100 0 68 23 17 17 41 1.90
6218--6243 13 2.0 13 100 0 52 15 0 30 53 1.42
7273--7297 13 1.9 13 100 0 50 72 12 0 16 1.13
13676--13715 21 2.0 20 85 5 53 65 5 0 30 1.14
13830--13860 15 2.1 14 94 5 53 35 0 0 64 0.94
13978--14033 23 2.5 22 91 2 85 66 0 1 32 1.03
13976--14019 15 2.9 15 87 9 63 65 0 0 34 0.93
14008--14058 14 3.7 14 92 7 79 62 0 5 31 1.19
14008--14061 26 2.0 26 80 16 58 62 0 7 29 1.22
16609--16635 14 1.9 14 100 0 54 62 7 7 22 1.46
25200--25247 21 2.3 21 92 0 78 18 18 18 43 1.88
29199--29236 20 1.9 20 94 0 67 63 5 10 21 1.46
30312--30368 16 3.6 16 95 2 98 33 19 7 40 1.78
31734--31765 15 2.1 15 100 0 64 21 6 12 59 1.55
31834--31898 29 2.2 29 91 0 103 46 15 18 20 1.84
32582--32623 2 21.0 2 81 18 52 47 0 4 47 1.23
32583--32623 20 2.0 21 95 4 75 48 0 4 46 1.23
33597--33638 21 2.0 21 85 0 57 35 14 9 40 1.78
48004--48034 15 2.1 15 93 0 53 16 6 9 67 1.39
48252--48282 13 2.5 13 94 5 55 48 29 0 22 1.51
48435--48485 21 2.4 21 90 6 77 47 11 5 35 1.65
48447--48489 21 2.0 21 100 0 86 48 13 4 32 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48565--48623 2 30.0 2 79 3 66 49 6 0 44 1.29
53122--53155 12 2.9 12 95 4 61 50 0 0 50 1.00
53241--53289 24 2.0 24 100 0 98 28 8 4 59 1.45
59567--59627 30 2.0 30 100 0 122 60 3 6 29 1.38
61884--61919 13 2.8 13 91 4 56 44 0 0 55 0.99
61927--61993 30 2.3 30 87 7 93 38 4 0 56 1.19
61936--61993 15 4.2 14 73 16 50 36 5 0 58 1.20
62064--62110 23 2.0 23 84 8 60 51 6 0 42 1.27
62170--62201 16 2.0 16 100 0 64 56 0 12 31 1.37
66342--66383 21 2.0 21 81 9 50 21 9 16 52 1.72
67880--67940 15 4.1 15 75 12 72 49 0 8 42 1.32
67890--67969 32 2.6 31 83 11 94 46 1 8 43 1.42
67996--68023 13 2.2 13 100 0 56 71 0 21 7 1.09
70834--70898 21 3.1 21 88 0 103 35 24 7 32 1.84
74466--74513 19 2.5 19 100 0 96 33 18 6 41 1.76
74980--75008 14 2.1 14 100 0 58 34 6 6 51 1.55
82407--82455 24 2.0 24 92 0 80 28 32 12 26 1.92
83631--83681 22 2.2 23 86 6 68 9 3 7 78 1.07
83739--83786 24 2.0 24 95 0 87 25 10 12 52 1.71
85483--85518 18 2.0 18 100 0 72 38 11 5 44 1.63
85484--85532 18 2.9 17 88 11 66 42 6 8 42 1.59
89754--89899 50 2.9 50 98 0 283 42 17 9 30 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92443--92504 21 2.8 22 90 7 90 14 25 11 48 1.77
92464--92511 21 2.3 21 92 0 78 12 31 8 47 1.71
93748--93790 21 2.0 21 90 0 68 32 9 25 32 1.88
94942--94989 24 2.0 24 87 0 69 31 10 25 33 1.89
103487--103534 23 2.1 23 92 0 78 41 8 2 47 1.45
116773--116828 23 2.4 22 80 11 67 42 0 5 51 1.24
121845--121890 9 5.2 9 82 15 60 36 0 0 63 0.95
121789--121896 55 1.9 58 81 12 136 32 1 0 65 1.03
121846--121894 14 3.6 14 81 10 57 36 0 0 63 0.95
121819--121891 12 5.6 13 74 11 69 31 0 0 68 0.90
121808--121896 11 8.2 11 80 12 87 29 1 0 69 0.95
131887--131928 21 2.0 21 90 0 66 14 26 7 52 1.67
143075--143122 23 2.1 23 92 0 78 47 2 8 41 1.45
151620--151688 24 2.9 24 76 8 70 34 26 7 31 1.84
152819--152861 21 2.0 21 90 0 68 32 25 9 32 1.88
154098--154166 21 3.1 22 85 8 86 49 10 27 13 1.73
154105--154166 21 2.7 23 90 7 92 48 11 25 14 1.77
156710--156855 50 2.9 50 97 0 274 30 9 17 42 1.81
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!