NC_042895.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042895.1 Trapa natans chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155553
Tables: 1
This is table 1 of 1 ( 56 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4978--5020 21 2.0 21 100 0 86 32 18 4 44 1.71
8781--8814 17 2.0 17 100 0 68 23 23 0 52 1.47
8838--8896 17 3.4 17 83 9 75 52 0 0 47 1.00
8935--8963 15 1.9 15 100 0 58 44 13 0 41 1.44
9176--9202 13 2.1 13 100 0 54 37 7 7 48 1.59
9442--9498 16 3.6 16 76 19 66 26 10 8 54 1.63
9429--9493 32 2.0 32 100 0 130 24 9 9 56 1.60
14771--14798 14 2.0 14 100 0 56 35 7 7 50 1.57
16571--16619 24 2.0 24 100 0 98 18 16 8 57 1.63
29876--29900 13 1.9 13 100 0 50 16 24 0 60 1.36
37938--37962 13 1.9 13 100 0 50 32 16 4 48 1.64
46954--46999 17 2.6 18 86 6 67 69 10 0 19 1.17
49515--49627 56 2.0 56 100 0 226 39 10 14 35 1.80
50259--50304 22 2.0 22 91 4 74 45 10 0 43 1.39
50264--50307 22 2.0 22 100 0 88 45 9 0 45 1.35
50906--50979 11 6.7 11 86 11 107 28 18 0 52 1.46
50916--50979 32 2.0 31 100 0 110 28 18 0 53 1.45
53500--53532 11 3.1 11 82 8 50 33 3 9 54 1.47
58092--58117 13 2.0 13 100 0 52 23 15 0 61 1.33
58258--58283 13 2.0 13 100 0 52 38 0 15 46 1.46
62200--62236 12 3.1 12 100 0 74 27 0 16 56 1.40
66777--66808 16 2.0 16 93 0 55 34 12 9 43 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68612--68639 14 2.0 14 100 0 56 28 0 14 57 1.38
70100--70131 12 2.8 12 90 9 50 43 0 12 43 1.42
70347--70389 21 2.0 21 100 0 86 27 18 4 48 1.68
70434--70530 15 6.8 13 72 16 61 44 5 2 48 1.36
70435--70530 42 2.2 44 81 12 117 44 5 2 47 1.37
70430--70523 32 2.9 34 78 12 92 44 5 2 47 1.37
70484--70536 25 2.0 28 82 10 67 45 3 1 49 1.31
70982--71017 18 2.0 18 88 0 54 16 8 2 72 1.21
71315--71408 40 2.2 42 80 10 104 55 0 11 32 1.36
71312--71407 39 2.5 39 76 17 101 54 0 11 34 1.37
71954--72012 14 4.2 13 80 16 57 64 0 1 33 1.04
72004--72036 14 2.4 14 94 0 57 84 0 6 9 0.76
71992--72039 25 2.0 25 83 4 62 81 0 4 14 0.84
72127--72165 21 1.9 21 94 5 71 30 23 10 35 1.88
79608--79644 16 2.3 17 86 9 51 72 8 10 8 1.27
84919--84952 17 2.0 17 100 0 68 52 0 11 35 1.38
85002--85036 15 2.3 15 100 0 70 45 8 11 34 1.71
90025--90077 16 2.8 19 72 21 58 47 3 20 28 1.68
90038--90072 16 2.2 16 100 0 70 51 0 22 25 1.48
92686--92751 21 3.2 21 80 2 71 10 22 9 57 1.60
95117--95199 18 4.6 18 100 0 166 33 4 32 28 1.78
95117--95199 9 9.2 9 78 0 94 33 4 32 28 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102707--102744 18 2.1 18 90 0 58 26 7 5 60 1.46
116517--116547 15 2.1 15 100 0 62 32 0 12 54 1.38
121811--121851 16 2.6 16 84 7 57 51 0 2 46 1.14
129885--129918 15 2.3 15 89 0 50 2 11 5 79 1.02
129892--129920 15 1.9 15 100 0 58 0 13 3 82 0.79
129892--129932 15 2.7 16 88 3 50 2 12 2 82 0.86
141249--141286 18 2.1 18 90 0 58 60 5 7 26 1.46
148804--148870 9 7.4 9 79 0 80 26 32 5 34 1.81
148795--148877 18 4.6 18 100 0 166 28 32 4 33 1.78
151260--151308 21 2.3 21 89 0 71 59 10 20 10 1.59
153917--153969 16 2.8 20 75 21 69 28 20 3 47 1.68
153922--153956 16 2.2 16 100 0 70 25 22 0 51 1.48
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Tables: 1
The End!