NC_042898.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042898.1 Woodfordia fruticosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159380
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6172--6197 12 2.2 12 100 0 52 65 0 15 19 1.27
9165--9204 19 2.1 19 100 0 80 30 5 0 65 1.14
9195--9235 19 2.3 18 87 8 57 36 4 4 53 1.44
9204--9240 19 1.9 19 94 0 65 35 5 8 51 1.55
9234--9285 15 3.5 15 91 0 77 44 11 5 38 1.65
10722--10751 14 2.1 14 100 0 60 43 0 0 56 0.99
11105--11143 20 2.0 20 94 0 69 41 7 7 43 1.62
14615--14647 17 1.9 17 93 0 57 15 0 0 84 0.61
29916--29941 13 2.0 13 100 0 52 84 0 7 7 0.77
33553--33594 19 2.2 19 95 4 75 26 0 0 73 0.83
33553--33592 20 2.0 20 100 0 80 25 0 0 75 0.81
34222--34253 16 2.0 16 100 0 64 37 12 0 50 1.41
34375--34408 17 2.0 17 100 0 68 58 11 0 29 1.33
34863--34910 24 2.0 24 100 0 96 33 0 8 58 1.28
44905--44931 12 2.2 12 100 0 54 33 14 7 44 1.73
44981--45017 18 2.0 19 89 5 58 27 16 2 54 1.56
44983--45024 18 2.3 19 83 4 50 33 14 4 47 1.65
49837--49866 15 2.0 15 100 0 60 46 0 13 40 1.43
50291--50333 13 3.1 14 86 10 61 44 0 6 48 1.29
50291--50338 13 3.4 14 85 11 53 45 0 6 47 1.27
52168--52205 19 2.0 19 100 0 76 57 10 5 26 1.53
59315--59340 13 2.0 13 100 0 52 38 0 15 46 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61370--61402 16 2.1 16 100 0 66 57 6 0 36 1.23
68057--68088 16 2.0 16 93 0 55 34 12 9 43 1.75
71478--71513 18 2.0 18 94 0 63 41 13 5 38 1.68
71515--71545 15 2.1 15 93 0 53 54 3 9 32 1.49
71557--71584 13 2.2 13 100 0 56 32 14 14 39 1.86
71836--71931 31 3.2 29 71 18 74 38 8 2 51 1.44
71837--71931 17 6.6 14 82 12 81 38 8 2 50 1.45
71864--71919 17 3.3 17 100 0 112 35 10 0 53 1.36
72303--72336 16 2.1 16 100 0 68 11 11 5 70 1.32
73135--73178 15 2.6 17 75 17 56 45 9 6 38 1.63
85943--85978 18 1.9 19 94 5 65 44 0 5 50 1.25
93708--93773 21 3.2 21 82 2 80 12 22 7 57 1.60
96133--96227 9 10.6 9 75 0 91 32 5 31 30 1.80
96133--96227 18 5.3 18 96 0 163 32 5 31 30 1.80
98741--98776 18 2.0 18 100 0 72 38 0 27 33 1.57
104098--104135 18 2.1 18 90 0 58 26 7 5 60 1.46
117782--117847 9 7.8 9 75 16 52 57 1 7 33 1.36
120598--120649 19 2.9 19 88 8 74 48 0 0 51 1.00
120617--120649 16 2.1 15 94 5 57 48 0 0 51 1.00
120807--120842 18 1.9 19 94 5 65 63 5 13 16 1.47
123099--123123 13 1.9 13 100 0 50 24 8 0 68 1.16
126153--126192 19 2.1 19 100 0 80 22 30 15 32 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129220--129248 13 2.2 13 100 0 58 17 13 13 55 1.70
144815--144852 18 2.1 18 90 0 58 60 5 7 26 1.46
150174--150209 18 2.0 18 100 0 72 33 27 0 38 1.57
152726--152810 9 9.4 9 76 0 89 27 32 5 34 1.81
152723--152817 18 5.3 18 96 0 163 30 31 5 32 1.80
155176--155265 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!