NC_042913.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042913.1 Aster tataricus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152992
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4286--4311 13 2.0 13 100 0 52 30 30 7 30 1.85
4323--4362 18 2.2 18 86 0 53 40 17 0 42 1.49
4329--4364 18 2.0 18 94 0 63 36 16 0 47 1.47
11829--11886 21 2.7 22 86 5 75 53 8 15 22 1.69
30188--30230 21 2.0 22 95 4 79 48 23 4 23 1.69
30925--30969 3 14.7 3 90 4 72 66 0 0 33 0.92
30921--30969 25 2.0 25 95 0 89 65 0 0 34 0.93
30945--31040 39 2.5 39 85 8 117 53 0 0 46 1.00
31003--31043 4 10.2 4 85 15 50 51 0 0 48 1.00
30967--31035 17 3.7 18 78 17 79 50 0 0 49 1.00
31342--31374 12 2.8 12 95 0 57 39 0 0 60 0.97
31357--31402 20 2.4 19 88 3 65 50 0 2 47 1.13
31361--31413 25 2.1 25 82 6 63 54 1 1 41 1.22
36297--36326 12 2.4 13 88 11 53 70 0 6 23 1.11
42305--42358 25 2.2 25 93 0 90 61 7 1 29 1.34
42303--42352 25 2.0 25 100 0 100 60 8 0 32 1.26
42347--42392 23 2.0 23 82 0 56 39 8 6 45 1.61
46733--46861 22 5.4 24 71 15 106 48 0 0 50 1.11
46746--46883 19 7.3 19 76 18 103 47 0 0 52 1.05
46811--46894 5 17.2 5 70 22 54 54 0 0 45 0.99
51330--51381 26 2.0 26 100 0 104 46 11 19 23 1.82
59381--59430 16 3.3 15 86 10 66 52 0 0 48 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59388--59496 5 22.2 5 73 17 52 56 0 1 40 1.16
61267--61307 13 3.0 13 86 10 55 34 12 0 53 1.38
65570--65607 16 2.4 16 90 0 58 36 10 15 36 1.82
68178--68217 21 1.9 21 89 0 62 32 22 10 35 1.87
72230--72313 42 2.0 42 86 4 116 34 7 0 58 1.26
75644--75678 10 3.4 10 88 4 52 25 0 0 74 0.82
75655--75700 16 2.9 16 75 18 51 28 0 2 69 1.00
82265--82374 49 2.3 49 93 4 190 28 8 11 51 1.67
84353--84468 45 2.7 44 88 7 175 32 3 6 57 1.40
91934--92008 18 4.4 17 88 8 73 29 8 25 37 1.84
91945--92008 9 7.1 9 74 0 65 29 7 26 35 1.85
91944--92021 18 4.3 18 96 0 138 29 10 25 34 1.89
94885--94910 13 2.0 13 100 0 52 76 7 7 7 1.15
99696--99757 31 2.0 31 100 0 124 35 6 9 48 1.62
107666--107729 32 2.0 32 93 0 110 39 26 7 26 1.83
109727--109751 12 2.1 12 100 0 50 60 8 16 16 1.58
112372--112429 19 3.1 19 97 0 107 37 13 0 48 1.43
113560--113584 12 2.1 12 100 0 50 68 8 8 16 1.38
124476--124515 21 1.9 21 94 0 71 42 32 2 22 1.67
125580--125625 22 2.0 23 83 8 58 15 10 2 71 1.23
129962--130025 32 2.0 32 93 0 110 26 7 26 39 1.83
137934--137995 31 2.0 31 100 0 124 48 9 6 35 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
138000--138068 31 2.3 30 90 5 104 65 2 7 24 1.32
142781--142806 13 2.0 13 100 0 52 7 7 7 76 1.15
145670--145747 18 4.3 18 96 0 138 34 25 10 29 1.89
145670--145747 9 8.7 9 71 0 66 34 25 10 29 1.89
145719--145757 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!