NC_043842.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043842.1 Cichorium intybus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152975
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7190--7249 18 3.3 18 100 0 120 28 11 26 33 1.91
23031--23092 32 1.9 32 93 0 106 41 22 8 27 1.82
27496--27541 23 2.0 23 100 0 92 39 13 4 43 1.63
27496--27555 23 2.7 22 87 10 61 41 10 3 45 1.54
28257--28292 18 2.0 18 100 0 72 61 0 11 27 1.30
29022--29061 19 2.1 19 95 0 71 40 12 15 32 1.84
34086--34121 16 2.2 16 100 0 72 36 5 5 52 1.48
34139--34166 14 2.0 14 100 0 56 28 7 14 50 1.69
40500--40534 15 2.3 15 90 0 52 20 14 31 34 1.92
45508--45569 32 1.9 32 93 0 106 27 8 22 41 1.82
61351--61410 18 3.3 18 100 0 120 33 26 11 28 1.91
61351--61426 36 2.1 36 87 0 107 35 26 11 26 1.91
73687--73724 19 2.0 19 100 0 76 52 5 15 26 1.64
74208--74245 19 2.0 19 100 0 76 26 10 5 57 1.53
75221--75248 13 2.2 13 100 0 56 53 7 0 39 1.28
75597--75630 17 2.0 17 100 0 68 47 23 5 23 1.73
76106--76145 10 4.1 10 80 6 55 12 17 2 67 1.33
76110--76147 19 2.0 19 100 0 76 15 15 5 63 1.48
76114--76155 19 2.2 19 86 0 57 23 11 4 59 1.51
79412--79439 13 2.2 13 100 0 56 21 39 0 39 1.54
81237--81275 19 2.0 20 95 5 71 38 10 15 35 1.81
93931--93955 12 2.1 12 100 0 50 60 8 8 24 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98764--98804 21 2.0 21 90 9 66 60 0 7 31 1.24
99674--99717 20 2.3 19 85 11 63 40 6 0 52 1.28
99682--99721 20 2.0 20 100 0 80 40 5 0 55 1.22
99895--99940 15 3.0 16 90 9 78 69 0 6 23 1.11
99896--99940 14 3.1 14 93 6 72 71 0 6 22 1.09
99973--100006 17 2.0 17 94 0 59 29 0 20 50 1.49
103611--103640 15 2.0 15 100 0 60 6 13 26 53 1.64
110729--110760 16 2.0 16 100 0 64 62 12 0 25 1.30
110763--110809 5 9.4 5 78 17 53 76 2 2 19 0.99
110774--110809 14 2.6 14 95 0 63 80 0 2 16 0.83
110767--110814 9 5.2 9 80 14 53 77 2 4 16 1.03
115226--115257 12 2.7 12 95 0 55 62 0 15 21 1.32
120824--120853 15 2.0 15 100 0 60 40 13 13 33 1.83
127579--127616 18 2.1 18 100 0 76 15 10 0 73 1.09
127905--127952 20 2.3 21 92 7 89 45 4 4 45 1.41
135271--135306 17 2.1 17 100 0 72 38 11 16 33 1.84
136680--136720 21 2.0 21 95 0 73 31 24 9 34 1.88
139105--139141 18 2.1 18 100 0 74 16 16 10 56 1.66
150378--150430 20 2.7 21 94 5 85 41 9 9 39 1.70
152633--152658 13 2.0 13 100 0 52 53 7 0 38 1.30
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!