NC_043873.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043873.1 Ocimum tenuiflorum cultivar Krishna chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151744
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8045--8086 22 2.0 21 90 4 66 33 0 0 66 0.92
8048--8090 13 3.4 13 87 3 61 37 0 0 62 0.95
12490--12522 17 1.9 17 100 0 66 60 6 12 21 1.53
28513--28550 15 2.6 15 95 4 69 44 0 21 34 1.52
44185--44213 13 2.2 13 100 0 58 55 0 6 37 1.27
56756--56847 30 3.1 30 90 6 159 33 2 28 35 1.69
58103--58133 16 1.9 16 93 0 53 29 16 16 38 1.90
59202--59247 21 2.2 21 100 0 92 28 26 15 30 1.96
67039--67079 21 2.0 21 95 0 73 29 26 9 34 1.88
82495--82529 17 2.1 17 100 0 70 22 5 11 60 1.52
87574--87628 24 2.5 22 85 8 67 14 23 12 49 1.78
87596--87663 21 3.2 21 77 8 75 11 22 10 55 1.65
89968--90057 18 5.2 17 92 4 94 31 8 24 35 1.86
89980--90057 18 4.3 18 95 0 138 30 10 25 33 1.89
97748--97778 15 2.1 15 100 0 62 32 6 12 48 1.67
97781--97811 11 2.8 11 95 0 53 32 6 16 45 1.72
97802--97838 17 2.2 16 86 13 56 29 0 24 45 1.53
105759--105819 31 2.0 31 93 0 104 40 21 9 27 1.85
118109--118133 12 2.1 12 100 0 50 8 0 32 60 1.26
120812--120841 15 2.0 15 93 0 51 36 26 16 20 1.93
124716--124756 11 3.5 12 84 12 50 0 21 2 75 0.92
128690--128750 31 2.0 31 93 0 104 27 9 21 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136671--136705 17 2.0 18 94 5 63 48 22 0 28 1.51
136698--136728 11 2.8 11 95 0 53 45 16 6 32 1.72
136731--136761 15 2.1 15 100 0 62 48 12 6 32 1.67
136751--136794 23 1.9 23 85 0 61 59 6 6 27 1.49
144452--144529 18 4.3 18 95 0 138 33 25 10 30 1.89
144452--144541 18 5.2 17 92 4 94 35 24 8 31 1.86
146864--146917 21 2.6 21 82 11 74 59 11 20 9 1.59
146846--146935 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!